Query= MSMg01no132_k09.b1 MSMg01no132_k09.b1 CHROMAT_FILE:
MSMg01no132_k09.b1 PHD_FILE: MSMg01no132_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:13 2005
(639 letters)
>mm_chr4_11932263_11933301
Length = 1039
Score = 1112 bits (575), Expect = 0.0
Identities = 611/629 (97%), Gaps = 12/629 (1%)
Strand = Plus / Minus
Query: 1 agcctagagtcttcccacaggcctgattcctaaacatcacagttagataccgctatcctt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 623 agcctagagtcttcccacaggcctgattcctaaacatcacagttagatacagctatcctt 564
Query: 61 ttttactaactacctacaatggagattacattcaactgagtttcagatagcactcgctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttttactaactacctacaatggagattacattcaactgagtttcagatagcactcgctcc 504
Query: 121 attcaaagcaaagtcattggggctcttccctgattgccagccaggagcttccatcttcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 attcaaagcaaagtcattggggctcttccctgattgccagccaggagcttccatcttcag 444
Query: 181 gctgcttttcctcttatgcacctctacactgcccagaacaagacaaaagtgcatacctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gctgcttttcctcttatgcacctctacactgcccagaacaagacaaaagtgcatacctca 384
Query: 241 gtcatcatta------ttttatccactggggtttgtatttgtgtggcctgtggcatccgc 294
||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtcatca--agagcac----atccactggggtttgtatttgtgtggcctgtggcatccgc 330
Query: 295 ctgccacaatgtatcacaaacggtgtgttctctccaccagtggttactcaatatcggcca 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctgccacaatgtatcacaaacggtgtgttctctccaccagtggttactcaatatcggcca 270
Query: 355 gagaagtgttattagcttacacactgcaaagcaagagaacatgccaaccagcattggatt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gagaagtgttattagcttacacactgcaaagcaagagaacatgccaaccagcattggatt 210
Query: 415 catgcactgaggtgtggttccccattctacttcctcccttagggtgtcctggcactgttg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 catgcactgaggtgtggttccccattctacttcctcccttagggtgtcctggcactgttg 150
Query: 475 aacaccaggatggaagggtgaagcagagctcagaatgggtggggcttcaaaatctggtcc 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 aacaccaggatggaagggtgaagcagagctcagaatgggtggggcttcaaaatctggtcc 90
Query: 535 acttggggatgccaagagaagacgaggggaaggccttctctgaggattttaatgctactt 594
|| ||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 89 acctggggatgccaagggaggacaaggggaaggccttctctgaggattttaatgctactt 30
Query: 595 gcagctgtcttagacgatattcagtgaaa 623
||| |||||||||||||||||||||||||
Sbjct: 29 gcatctgtcttagacgatattcagtgaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_k09.g1 MSMg01no132_k09.g1 CHROMAT_FILE:
MSMg01no132_k09.g1 PHD_FILE: MSMg01no132_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:13 2005
(629 letters)
>mm_chr4_11796686_11797708
Length = 1023
Score = 1112 bits (575), Expect = 0.0
Identities = 613/629 (97%), Gaps = 6/629 (0%)
Strand = Plus / Plus
Query: 1 gcttaaaaattgggcatgcactgaacacaaacaaatacagtgcagtctaatttaggcctt 60
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 gcttaaaaattgggcatgccctgaacacaaacaaatacagtgcggtctaatttaggcctt 260
Query: 61 ggctggccatggctgagacccagatgtatccgggccttctggttctgaagccctgccttg 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctggcc------gagacccagatgtatccgggccttctggttctgaagccctgccttg 314
Query: 121 gatagcgatggaatttccatgttgacatttccctggcataactgtttgtctctgtcctcc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 315 gatagcgatggaatttccatgttgacatttccctggcataactgtttgtctctgtcttcc 374
Query: 181 agtcctctgggtcaatgtgcttcaaaagcaggacaccacaggccccaggaagttctacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agtcctctgggtcaatgtgcttcaaaagcaggacaccacaggccccaggaagttctacca 434
Query: 241 gtcagtggtggaggtgggggaggggacagccaagctgctactgtgggtgaggacatcttt 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 435 gtcagtggtggaggtgggggagggggcagccaagctgctactgtgggtgaggacatcttt 494
Query: 301 cttaccacttacaccagaaacttgctgttcctcacactttctctgtgtctcatcggcctg 360
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 495 cttaccacttacaccagaaacttgctgttcctcagactttctctgtgtcacatcggcctg 554
Query: 361 tgacacatgtgcacacagtttcactgaaggctcaggagaaatggaatcaccacaggaaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tgacacatgtgcacacagtttcactgaaggctcaggagaaatggaatcaccacaggaaag 614
Query: 421 gattctagcttgggctttaggcctcacctggctctgtccaccctggtcagtttccaggca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gattctagcttgggctttaggcctcacctggctctgtccaccctggtcagtttccaggca 674
Query: 481 gacatgtctcccgaactcaacccgcaaccatgctgccagcctgtgcctcagaagagagaa 540
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gacgtgtctctcgaactcaacccgcaaccatgctgccagcctgtgcctcagaagagagaa 734
Query: 541 cgatttcaactttctctatctcaaaagttggggagcatctcctgttcccacaccttgtaa 600
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 735 cgatttcaactttctctatctcagaagttggggagcatcccctgttcccacaccttgtaa 794
Query: 601 cccctcccttttctcctccactggcacag 629
|||||||||||||||||||||||||||||
Sbjct: 795 cccctcccttttctcctccactggcacag 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1023
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1013
Effective search space: 627047
Effective search space used: 627047
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
