NNAATCTATAATTGCGGCGCTAATACGACTCCTATATTCAGAAATCGGCG
GAATTCTACATTACTTTCGTGTCTAAAACCAATAACTCCTGAGGGTGTTT
AAACTATAGGATAATTGTCTAGATTATTTTTAAAAGCAATTCTTAGATAA
AGCGTTGTGTTATTGAGACAGTCAAGATGAATGGTGGGCAGGGAAAGAGC
CGCTGGTGAAAACCATGAAACTTTAATTTTCACAACCTACTTCATTTGTC
TTTCATCTTATTTGTTTTGAAAGGTCTCACGTTTTACATGATTTGGGCAA
CTTAATTCCACTTGTATCATCTAAGTGCCATGGGCATATACATTTGCTTC
ATTCACCTACAGATGTATAAAGCTTATGACGAGTTTTTCAGATAAAATGC
TGTCTACACAATAATTTACATTTTATTTCTTGTCTATTGTTTGAAGGATA
GATAAATTATCACACGCGCTACCATGATCATTACTTGGAATTTTTAAAGC
AAGGTGAAAAATTAAGAAATGATTTCAGTTCTCTTATATTTCTTTAAAAC
TTGATTTACAGATGAGATGTCTGTCACAAAGTTTCCCAGGGGCTGTTGGG
AAGAGTATGCATTCTCTGATGTTGCCATTAGTATTCCGTAGAGAAGTTTT
AAAGGTTTTTAACCTGTGAAATGGTTTACATCTGATGTTTCTTTGTTGGA
TAACTTTGGAGG

NCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGCTATGATCAGTACTCCATTTTC
AATTGGGTTATTTAGTATGATGATGTCCCGTTTTGTGAGTTCTTCATATA
TTTTACATATTAGTCCTGTATCAGATGTGGAGTTGGTAAAAATCTTTCCT
CATTGTGTAGGCTGCCTTTTTGTACTACTGATGATGTGTTATGCCTTACA
AAGCTTTTTAGTTTCATGAGGTCCCATTTATTAACTGTCTTCCTGCCTAT
GCTATCAGTGCTGTTTAGGAAGCTGTCTCTTGTGCCAATGTGTTCAAAGC
TATTCCCTACTTTTGCTTTTATTGGGTTCAGTGTATTTGTTTTTATGTTG
AGGACTACGATGCACTTGGACTTCAAATTTGTATAAGGTAATAAGGAAAT
CTTTGCATTCTTCTAAAAGCAACAACACAATTATACCAGCACCATTCGTT
GAAAAGGATTTCCTCTTTTTTTTTTTTAATTGTGTATTTCTGGCTTCTTT
ATCAAGCATCAGATTTCCATAGGTGTGTGGATTTATATCTTGATTTTCAA
TTTCATTCCATTGTTTAAATGTGTCTGGTTTTATGCCAATAGGATGTTGT
TTTGAGCTATTAGACAGCTTGAAATCCAGGATGGTGATACCTCAGGGACT
TCTTTTATTG

Query= MSMg01no132_k19.b1 MSMg01no132_k19.b1 CHROMAT_FILE:
MSMg01no132_k19.b1 PHD_FILE: MSMg01no132_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:15 2005
         (664 letters)



>mm_chr4_25620552_25621616
          Length = 1065

 Score = 1205 bits (623), Expect = 0.0
 Identities = 653/663 (98%), Gaps = 1/663 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattctacattactttcgtgtctaaaa-ccaataactcctgagggtgtttaaactatag 61
           ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 203 gaattctacattactttagtgtctaaaaaccaataactcctgagggtgtttaaactatag 262

                                                                       
Query: 62  gataattgtctagattatttttaaaagcaattcttagataaagcgttgtgttattgagac 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gataattgtctagattatttttaaaagcaattcttagataaagcgttgtgttattgagac 322

                                                                       
Query: 122 agtcaagatgaatggtgggcagggaaagagccgctggtgaaaaccatgaaactttaattt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agtcaagatgaatggtgggcagggaaagagccgctggtgaaaaccatgaaactttaattt 382

                                                                       
Query: 182 tcacaacctacttcatttgtctttcatcttatttgttttgaaaggtctcacgttttacat 241
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcacaacctgcttcatttgtctttcatcttatttgttttgaaaggtctcacgttttacat 442

                                                                       
Query: 242 gatttgggcaacttaattccacttgtatcatctaagtgccatgggcatatacatttgctt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gatttgggcaacttaattccacttgtatcatctaagtgccatgggcatatacatttgctt 502

                                                                       
Query: 302 cattcacctacagatgtataaagcttatgacgagtttttcagataaaatgctgtctacac 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cattcacctacagatgtataaagcttatgacgagtttttcagataaaatgctgtctacac 562

                                                                       
Query: 362 aataatttacattttatttcttgtctattgtttgaaggatagataaattatcacacgcgc 421
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||
Sbjct: 563 aataatttacattttatttcttgtctattgtttgaagaatagataaattatcacacaagc 622

                                                                       
Query: 422 taccatgatcattacttggaatttttaaagcaaggtgaaaaattaagaaatgatttcagt 481
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgccatgatcattacttggaatttttaaagcaaggtgaaaaattaagaaatgatttcagt 682

                                                                       
Query: 482 tctcttatatttctttaaaacttgatttacagatgagatgtctgtcacaaagtttcccag 541
           ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 683 tctcttacatttctttaaaacttgatttacagatgagatgtctgtcacaaagcttcccag 742

                                                                       
Query: 542 gggctgttgggaagagtatgcattctctgatgttgccattagtattccgtagagaagttt 601
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 743 gggctgttgggaagagtatgcattctctgatgttgccattagtattctgtagagaagttt 802

                                                                       
Query: 602 taaaggtttttaacctgtgaaatggtttacatctgatgtttctttgttggataactttgg 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 taaaggtttttaacctgtgaaatggtttacatctgatgtttctttgttggataactttgg 862

              
Query: 662 agg 664
           |||
Sbjct: 863 agg 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1065
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1055
Effective search space:   689970
Effective search space used:   689970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)