Query= MSMg01no132_l04.b1 MSMg01no132_l04.b1 CHROMAT_FILE:
MSMg01no132_l04.b1 PHD_FILE: MSMg01no132_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:17 2005
(635 letters)
>mm_chr4_14302940_14303973
Length = 1034
Score = 1220 bits (631), Expect = 0.0
Identities = 634/635 (99%), Gaps = 1/635 (0%)
Strand = Plus / Minus
Query: 1 aaggccttcttttatggcctctgttgtcacagttgctgagctgggataccacgttaaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 834 aaggccttcttttatggcctctgttgtcacagttgctgagctgggatacca-gttaaatg 776
Query: 61 ctcatccaaagagcaacctggaaacactccaaaggacagacctgtgactgagtggagaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ctcatccaaagagcaacctggaaacactccaaaggacagacctgtgactgagtggagaca 716
Query: 121 agtccacatgtatatgcttcctcaatacttacaggaagaaagaactcctgcatgcgactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 agtccacatgtatatgcttcctcaatacttacaggaagaaagaactcctgcatgcgactt 656
Query: 181 gtaagttctctagaagtcttctaggatttaggaacaagatgcttgagagccactatcctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gtaagttctctagaagtcttctaggatttaggaacaagatgcttgagagccactatcctc 596
Query: 241 catctgctgtctctcttatacactgcagtggtccattgctcacttatctccattggattg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 catctgctgtctctcttatacactgcagtggtccattgctcacttatctccattggattg 536
Query: 301 aattttctgacactttgttcttatgtcttgtttctagtgaacctagttctaaggtgccct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aattttctgacactttgttcttatgtcttgtttctagtgaacctagttctaaggtgccct 476
Query: 361 ggttttaagataatccctggagaatatagtgactaagtatattggtattaattagaggtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ggttttaagataatccctggagaatatagtgactaagtatattggtattaattagaggtt 416
Query: 421 gagactatcatgcaaataaataaaaacataatcataaagatttgtttaaatcaacttata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gagactatcatgcaaataaataaaaacataatcataaagatttgtttaaatcaacttata 356
Query: 481 tgaataaaaagtactattgaacacatgcacacaataccccttgcttttcttttgagcaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tgaataaaaagtactattgaacacatgcacacaataccccttgcttttcttttgagcaaa 296
Query: 541 gaattgtaattcaagaatgtgctgttgaagctcaaatatttcctgtcaggcatagagttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gaattgtaattcaagaatgtgctgttgaagctcaaatatttcctgtcaggcatagagttt 236
Query: 601 ttaataggaagaacaaataaaatgttatttatgca 635
|||||||||||||||||||||||||||||||||||
Sbjct: 235 ttaataggaagaacaaataaaatgttatttatgca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1034
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1024
Effective search space: 640000
Effective search space used: 640000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_l04.g1 MSMg01no132_l04.g1 CHROMAT_FILE:
MSMg01no132_l04.g1 PHD_FILE: MSMg01no132_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:17 2005
(519 letters)
>mm_chr4_14139194_14140112
Length = 919
Score = 982 bits (508), Expect = 0.0
Identities = 514/516 (99%)
Strand = Plus / Plus
Query: 1 cagacctaaattcatgtgcttaaaacagctgcttggccttgaactgtcactgtgctctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagacctaaattcatgtgcttaaaacagctgcttggccttgaactgtcactgtgctctgg 260
Query: 61 gtccctcttactgtgtctttgctctgggaccctcttgctgtgcccctctgtgctgggctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtccctcttactgtgtctttgctctgggaccctcttgctgtgcccctctgtgctgggctg 320
Query: 121 tgtttctagaagtgccagcatctagataatcacaggtcagcctgtgcaatgtgacctgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtttctagaagtgccagcatctagataatcacaggtcagcctgtgcaatgtgacctgtg 380
Query: 181 ccagacagcaatgaattcgtgagaagtaataggtaatttgacctaatttggcttgagcct 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagacagcaatgaattcctgagaagtaataggtaatttgacctaatttggcttgagcct 440
Query: 241 ctcctgggctgagatgagattaccgactgaatacaattatacatgatcatttggtgcttt 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcctgggctgagatgagattaccaactgaatacaattatacatgatcatttggtgcttt 500
Query: 301 tgacctacaggcagctagggactcaagttggatcatctcacctatgaaatttccccaagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgacctacaggcagctagggactcaagttggatcatctcacctatgaaatttccccaagg 560
Query: 361 gtttctagataatgactttaaatgctaattacaacatgtagtcaatgctctgataaaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttctagataatgactttaaatgctaattacaacatgtagtcaatgctctgataaaatt 620
Query: 421 gagagcattttgatttatgatggatattaagtaagagcaggaataaaacccagtgtattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagagcattttgatttatgatggatattaagtaagagcaggaataaaacccagtgtattt 680
Query: 481 aaagggtttaaatgcactctgaaggtttgaacatga 516
||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaagggtttaaatgcactctgaaggtttgaacatga 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
