Query= MSMg01no133_l07.b1 MSMg01no133_l07.b1 CHROMAT_FILE:
MSMg01no133_l07.b1 PHD_FILE: MSMg01no133_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:35 2005
(647 letters)
>mm_chr4_16346479_16347525
Length = 1047
Score = 992 bits (513), Expect = 0.0
Identities = 570/589 (96%), Gaps = 4/589 (0%)
Strand = Plus / Minus
Query: 61 gagaagctgagaaatttcttaatgggttacaaatgttctgggctctatgtggacttgctg 120
||||||||||||| |||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct: 626 gagaagctgagaactttcttaatgagttacaaatgttctgggctgtctgtggacttgctg 567
Query: 121 atactaccagaaagaaatggaatacactcaagtcagtgtaaacaattttttatatagaga 180
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 566 atactaccagaaagaaatggcatacactcaagtcagtgtaaacaattttttatagagaga 507
Query: 181 gtacatgcaattg-ctactataaagaagaaataagtgacattttacttacatgaacaccc 239
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 506 gtacatgcaattgtc-actataaagaagaaataagtgacattttacttacatgaacacac 448
Query: 240 atggagtatttacactagaattaccttttt-ttatatctatagagtttagaaacaaaaga 298
|||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||
Sbjct: 447 atggagtatttacactagaattacctttttcatataactatagagtttagaaataaaaga 388
Query: 299 ataagtgaacagtcttagaaaatataatatatacaaagttttctagggttacttctctaa 358
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ataagtgaacagtcaaagaaaatataatatatacaaagttttctagggttacttctctaa 328
Query: 359 ttgtttattcagttttgcccatttccttgattgcttgcatgttcactttttgtaattgat 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 -tgtttattcagttttgcccatttccttgattgcttgcatgttcactttttgtaattgat 269
Query: 419 aaacaaccatttaaatattatataatataaaaatattatttggtgtttcttaatatatag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aaacaaccatttaaatattatataatataaaaatattatttggtgtttcttaatatatag 209
Query: 479 ttgttaatacaaattctgacctctgtccctcccccttttgaatctgagcagcctgtgaca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttgttaatacaaattctgacctctgtccctcccccttttgaatctgagcagcctgtgaca 149
Query: 539 taagtgaaggtaactataatctccaaggttatacccaatgaggtcattacaaacctacat 598
|||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct: 148 taagtgaaggtaactataatctccaaggctatatctaatgaggtcattacaaacctacat 89
Query: 599 gtctgagcaatataattattctatagctatcatcctgccaggataccac 647
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 gtctgagcaatataattattctatagctatcatcctgccaggataccac 40
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no133_l07.g1 MSMg01no133_l07.g1 CHROMAT_FILE:
MSMg01no133_l07.g1 PHD_FILE: MSMg01no133_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:35 2005
(232 letters)
>mm_chr4_16254152_16254783
Length = 632
Score = 433 bits (224), Expect = e-126
Identities = 230/232 (99%)
Strand = Plus / Plus
Query: 1 gactagaaggaatactactgcagcctttatattcatgtaacactcaaaatgaaacacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gactagaaggaatactactgcagcctttatattcatgtaacactcaaaatgaaacacaaa 260
Query: 61 atggcacaccaaatacatgtaatcaacaccaaatgaacacatccaagcttagaatatcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggcacaccaaatacatgtaatcaacaccaaatgaacacatccaagcttagaatatcag 320
Query: 121 cattttcaaatgttaagctttgactagaattacttacagtaattgctcaaactgaaacaa 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 cattttcaaatgttaagctttgactagaattacttgcagtaattgctcaaactgaaacaa 380
Query: 181 tatttggaccctttgaatctgatataatgtaggccaactaccatcatcttca 232
||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 tatttggaccctttgaagctgatataatgtaggccaactaccatcatcttca 432
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space: 138929
Effective search space used: 138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
