Query= MSMg01no133_o03.b1 MSMg01no133_o03.b1 CHROMAT_FILE:
MSMg01no133_o03.b1 PHD_FILE: MSMg01no133_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:49 2005
(537 letters)
>mm_chr4_18120591_18121527
Length = 937
Score = 959 bits (496), Expect = 0.0
Identities = 524/538 (97%), Gaps = 10/538 (1%)
Strand = Plus / Plus
Query: 4 gaattctgatgacatttac----gaggaggaggaagtctcttacaaaagggagcagatca 59
||||||||||||| || |||||||||||| ||||||||||||||||||||||||
Sbjct: 204 gaattctgatgac----acggaagaggaggaggaaatctcttacaaaagggagcagatca 259
Query: 60 tagtggaggtaaaccttaataaccaaacattaaatgtctctaaaggggaaaatagtattt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tagtggaggtaaaccttaataaccaaacattaaatgtctctaaaggggaaaatagtattt 319
Query: 120 tttgttcacatgctgagttcagaattccctaaaaatatgtgtatttgagggatatgagga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tttgttcacatgctgagttcagaattccctaaaaatatgtgtatttgagggatatgagga 379
Query: 180 acttcagaaggaatcatctgaggggtgataacacctttgagtgtgagtgctgtcaattca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acttcagaaggaatcatctgaggggtgataacacctttgagtgtgagtgctgtcaattca 439
Query: 240 tgatttgtgataaaaactgaacaaagggaaaagcagaagtccatgtgagtatcagcaatc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgatttgtgataaaaactgaacaaagggaaaagcagaagtccatgtgagtatcagcaatc 499
Query: 300 tctctgttttttgacctactatgatagaagtgctgagttcagccatgctttcctcccatg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctctgttttttgacctactatgatagaagtgctgagttcagccatgctttcctcccatg 559
Query: 360 accagctgtttccctgaacctgttagtcaaaaagtaattcttcctttaatcccagcactt 419
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 560 accagctgtttccctgaacctgttagtcaaaaagtaattcttcctttaatcctagcactt 619
Query: 420 gggaggcagaggcaggcagatttctgagtttgaggccagcctgtccacaaagaaagttcc 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 620 gggaggcagaggcaggcagatttctgagtttgaggccagcctgtctacaaagaaagttcc 679
Query: 480 aggacatccagggctatacagagaaatcctgtctagggaaaaaaaaaatatgggggta 537
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 680 aggacacccagggctatacagagaaatcctgtctagggaaaaaaaa--tatgggggta 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no133_o03.g1 MSMg01no133_o03.g1 CHROMAT_FILE:
MSMg01no133_o03.g1 PHD_FILE: MSMg01no133_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:49 2005
(510 letters)
>mm_chr4_18257193_18258102
Length = 910
Score = 955 bits (494), Expect = 0.0
Identities = 506/510 (99%)
Strand = Plus / Minus
Query: 1 tgctggaaatataaaacagaagaggattcaaaactgcattctcagtgtacctcaaaaacc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 858 tgctggaaatataaaacagaagaggattcaaaactgcattctcagtgtacctgagaaacc 799
Query: 61 tctcttgacagatagtgtcagaagtagccacagagagtgactgttgaaccacatgctttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tctcttgacagatagtgtcagaagtagccacagagagtgactgttgaaccacatgctttc 739
Query: 121 acttaatgtttgtatgtggcaactctaatttaggatgaatctgactgtagtttcttattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 acttaatgtttgtatgtggcaactctaatttaggatgaatctgactgtagtttcttattt 679
Query: 181 cttttttctatctttctttctttttaaaattatttaaacattatctttatttatttttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cttttttctatctttctttctttttaaaattatttaaacattatctttatttatttttga 619
Query: 241 ggagtcctatccagacatacttcagtttcaaaaacgtagctggaatatacctgtgttgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 618 ggagtcctatccagacatacttcagtttcaaaaacgtagctggaatatacctgtgctgac 559
Query: 301 tgacctaataactcattgagtatgaggcatatgagcagattgctaatctgtcattcattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgacctaataactcattgagtatgaggcatatgagcagattgctaatctgtcattcattt 499
Query: 361 tgctggcatcctatatgatgtgttttatgggttataaaggaattttacgtatattaaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgctggcatcctatatgatgtgttttatgggttataaaggaattttacgtatattaaaaa 439
Query: 421 cccgggcatatacccagaagatgttccaacttgtaataaggacacatgttgcattacgtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 438 cccgggcatatacccagaagatgttccaacttgtaataaggacacatgttgcattacatt 379
Query: 481 catagcagccttatttataatagccagaag 510
||||||||||||||||||||||||||||||
Sbjct: 378 catagcagccttatttataatagccagaag 349
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
