BAC Information

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BAC

Clone NameMSMg01-136F19
Chromosome4 (Build37)
Map Location 128,992,066 - 128,992,700
singlet/doubletsinglet
Overlap geneRbbp4
Upstream geneZscan20, Tlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync
Downstream geneZbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1, Tinagl, Gm853, Serinc2, Fabp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136F19.T7 (MSMg01no136_f19.b1)MSMg01-136F19.TJ (MSMg01no136_f19.g1)
ACCAG342584AG342585
length722719
length of high quality
(start - end)		672 (51 - 722)640 (80 - 719)
definitionCHROMAT_FILE: MSMg01no136_f19.b1 PHD_FILE: MSMg01no136_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:43 2005CHROMAT_FILE: MSMg01no136_f19.g1 PHD_FILE: MSMg01no136_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCACAGCTACCGGAGCTGGAGAGATGGCTGGGAGCACTGGC
TGCTTTTGCAGAGGACCTGGTCCCAGTTTCCAGCACTTGCATGGTAGCGC
ATAGTTACCTGTAACTCCAGTTCCCAGGGATCTGAGTCCTTTTTAGGTCC
TCCACAGGAATTGGACATATAGCTGGCAAATATATCATAATAAAAATAAA
TGTATCTAGCCAGGTAGAGGTGGTGCTCACCTTCAGTCCCAGCGCTTGAG
GGGCAGGGGCAGGTGGATCTCTGTGAATTTAAGGCCAGCTTTGTTTACAG
AGTGAGTTCTAAGATAGCTAGGGCTAATAGAAATCCTATCTCAAAAAACA
GTGTTCACTTAACTACTTTGGATAAAAAACTTTTTAGGATTATAATTTGT
TGAGTTTAAGATGAATCTAAAAATATAGGAATTGGGCTCTTGATATGGCT
CTGTGGGTAAAGGTGCTTGTGTAAGACCCCCTTTCGGGGACCCCCACTCT
AGTGTCGGGAGAGTGAGCCCACTCAAAGAAACATGAGAATCCTTCTTGCT
GTAAGCACATTGAGGCAGTTTAATGGCGGAGCTCCGGGTTGAAATGTATC
TCACACAGGAGTCAGTGGATTCGACCCTGAGGCTCGGAAGCTAGGGGTTT
TTAATGGGGTAAAGGGCTTAGG

NNNNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAGGCTGGTCCACAAG
AGTGAGTTCGAGGATGGATGGCCAGAGCTACATAGTAAGAAAAAGGGAGC
ACCAATAAGCCAGCTTGTCCTCTCCTCTAGTCCTTAAGCCCTGGCATTTG
GAAAGCTGAGGCAGGTAGATAGCTATGAATTAAATCCAGCCTGCTTCACA
CAGTGAAATCCTATCTCAAAAAACAAAAACAAAAAAACCACAAAGCAACA
CAATTCTTTACTGGGAAACAGTGGTAAAGAACCCAGGTACAGTTCTAAGC
ACCCACTATCATCAGTATCTGCACGCCAAGGGGATCTGATGCCCTCACTT
CGGCTTCCAAAGGCACTGCATGCAAATGGGGCACATAAAAAAAAGCAGGA
AGAACACTCAATCAGGTAAATAAATCCAAAACAAAACCTGTTAGGTCTTT
ATGGTCTCAAGACTATCTTAAATACAAGGCTGTGACATCACAAACTGCTA
AAAGATTTTAAAATTCTCTTTAAAGAAATAAGAACATCTTGTGCTGATCT
CGGCAGCACATATACTAAAGAAATAAGTACATCTTAACATCTTAAACAAA
GCTCTAAAAGTCAGGCATAGTGGTTTATGCCTTTAGCCCAGCACTTGGGA
GGCAAAGGCAGATCTCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_f19.g1 MSMg01no136_f19.g1 CHROMAT_FILE:
MSMg01no136_f19.g1 PHD_FILE: MSMg01no136_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:43 2005
         (640 letters)



>mm_chr4_128991866_128992901
          Length = 1036

 Score = 1189 bits (615), Expect = 0.0
 Identities = 632/639 (98%), Gaps = 4/639 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggccaggctggtccacaagagtgagttcgaggatggatggccagagctacatagtaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggccaggctggtccacaagagtgagttcgaggatggatggccagagctacatagtaag 260

                                                                       
Query: 61  aaaaagggagcaccaataagccagcttgtcctctcctctagtccttaagccctggcattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaagggagcaccaataagccagcttgtcctctcctctagtccttaagccctggcattt 320

                                                                       
Query: 121 ggaaagctgaggcaggtagatagctatgaattaaatccagcctgcttcacacagtgaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaagctgaggcaggtagatagctatgaattaaatccagcctgcttcacacagtgaaat 380

                                                                       
Query: 181 cctatctcaaaaaacaaaaacaaaaaaaccacaaagcaacacaattctttactgggaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 381 cctatctcaaaaaacaaaaacaaaaaaaccacaaagcaacacaattctttactgggggac 440

                                                                       
Query: 241 agtggtaaagaacccaggtacagttctaagcacccactatcatcagtatctgcacgccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtggtaaagaacccaggtacagttctaagcacccactatcatcagtatctgcacgccaa 500

                                                                       
Query: 301 ggggatctgatgccctcacttcggcttccaaaggcactgcatgcaaatggggcacataaa 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 ggggatctgatgccctcacttcggcctccaaaggcactgcatgcaaatggggcacataaa 560

                                                                       
Query: 361 aaaaagcaggaagaacactcaatcaggtaaataaatccaaaacaaaacctgttaggtctt 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaa-gcaggaagaacactcaatcaggtaaataaatccaaaacaaaacctgttaggtctt 619

                                                                       
Query: 421 tatggtctcaagactatcttaaatacaaggctgtgacatcacaaactgctaaaagatttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tatggtctcaagactatcttaaatacaaggctgtgacatcacaaactgctaaaagatttt 679

                                                                       
Query: 481 aaaattctctttaaagaaataagaacatcttgtgctgatctcggcagcacatatactaaa 540
           ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||
Sbjct: 680 aaaattctctttaaagaaataa---catcttgtgctgatctcggcagcacatatactaaa 736

                                                                       
Query: 541 gaaataagtacatcttaacatcttaaacaaagctctaaaagtcaggcatagtggtttatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gaaataagtacatcttaacatcttaaacaaagctctaaaagtcaggcatagtggtttatg 796

                                                  
Query: 601 cctttagcccagcacttgggaggcaaaggcagatctctg 639
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 797 cctttagcccagcacttgggaggcaaaggcagatctctg 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1036
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1026
Effective search space:   646380
Effective search space used:   646380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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