BAC Information

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BAC

Clone NameMSMg01-136N24
Chromosome4 (Build37)
Map Location 107,817,616 - 107,914,627
singlet/doubletdoublet
Overlap geneEchdc2, Zyg11a, Zyg11b
Upstream gene2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2
Downstream geneLOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1, Osbpl9, Calr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136N24.T7 (MSMg01no136_n24.b1)MSMg01-136N24.TJ (MSMg01no136_n24.g1)
ACCAG342956AG342957
length723722
length of high quality
(start - end)		674 (50 - 723)642 (81 - 722)
definitionCHROMAT_FILE: MSMg01no136_n24.b1 PHD_FILE: MSMg01no136_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:23 2005CHROMAT_FILE: MSMg01no136_n24.g1 PHD_FILE: MSMg01no136_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,914,117 - 107,914,627)(107,817,616 - 107,818,256)
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATC
CGCGGAATTCTCTTCTTCATGATTTGGTAGAGTCATTTGGTGTTTTCTGG
AATGATACAAACTATATTTGTAATGGTTAAATATAAAAGCTTCATAATGT
AGTAATAGTTAAAATAAATATTGTAACATATCCTATGTTTTGTGTCTTCT
AGCATTCAGCTATTTTGAAATGGCCAACTCCAGAGTGTGAGATGGTAGCA
TACAGGTAACTAGCATGATTATTAAATAATCTTGTAATTTTTCTTACAAT
CTTTACTTCAAGTACAATCTCATAGTACTGTTTTTCAGTAAAGTAAAGTA
GTTGCTTATTGTGGTGCCTGCTTATAATCCCAGCACTGTGGAGACTGAGG
CAGGACTGCCACGATCCAGTCTAGGCTTGGACAAGACCCTGTCTCAAGGT
GGATTTTAAAAAAATATTTTGAGGCCGGGCGTGGTGCACGCCTGTAATCC
CAGCGCTCTGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCT
GGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACCCAGAGAAACCCTG
TCTCAAAAAACCAAAAAAAAAAAAAATTTTTGGCTTATTTTCTACTATTT
ATTCATCATCCCCTTTTCCTTATTTTTGAAGGCATATCTCTGAAATCTAT
CTGCAGTTTAACTTTAAAGTTGA

NNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAATCAGTAACCCAGAGGT
TCCTTAAAGGACTAGTGTCCAGAGGTGGAATCTCTCACAGTGGAGTAGAC
CCTCCCACATCAACCATTAACCAAGGAAATGCTATTGAAGGTCAAGGTGA
GGGAGACATTCCTCAGCTGAGATTCCTTCTAGGTTTGGGGCAAGTTGACA
AAAACAAGAAAACAAGCCTTTGAGGTGTAATTTGAAAACCACCAAAATGG
CACAAATGGTGGGAGATAAGAGAATCAATTGCTTATTCTTGCTTGGAGAA
GCCACATGGGTACATCTTACTTTATTCTCTTCTGCCTTGGGGAACACATA
CCACATAACCACTTCTTCAGAGCACCTTTCTGTTTTTCTGAAATATTTGT
GAAAATTATTTTTAATTATGTGTATTAGGGTGGGGGTATGTGTACATTCG
TGCAGGTGCCCACAGTGGCCAGAGCATCAGATCCCCTTGTGTTGGGGCCG
GCCAGCAGCTCACATGTCCGGATTTGAGCCTGGAAGGCATCTTGGAATCT
GGAAGAAAAGAGGGAGCCTAGGTGGGTAGAGAAACAATGGAACCAAAACA
TGCTAGTCTATTCAAAGTTCAAATTCTAATGTCGGGAAACACACCTTATA
AAAAGGTGGGGAAAAGTCCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_n24.b1 MSMg01no136_n24.b1 CHROMAT_FILE:
MSMg01no136_n24.b1 PHD_FILE: MSMg01no136_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:23 2005
         (674 letters)



>mm_chr4_107914117_107915190
          Length = 1074

 Score =  942 bits (487), Expect = 0.0
 Identities = 505/511 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattctcttcttcatgatttggtagagtcatttggtgttttctggaatgatacaaact 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ggaattctcttcttgatgatttggtagagtcatttggtgttttctggaatgatacaaact 452

                                                                       
Query: 65  atatttgtaatggttaaatataaaagcttcataatgtagtaatagttaaaataaatattg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 atatttgtaatggttaaatataaaagcttcataatgtagtaatagttaaaataaatattg 392

                                                                       
Query: 125 taacatatcctatgttttgtgtcttctagcattcagctattttgaaatggccaactccag 184
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 taacatatcctatgtcttgtgtcttctagcattcagctattttgaaatggccaactccag 332

                                                                       
Query: 185 agtgtgagatggtagcatacaggtaactagcatgattattaaataatcttgtaatttttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 agtgtgagatggtagcatacaggtaactagcatgattattaaataatcttgtaatttttc 272

                                                                       
Query: 245 ttacaatctttacttcaagtacaatctcatagtactgtttttcagtaaagtaaagtagtt 304
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ttacaatctttatttcaagtacaatctcatagtactgtttttcagtaaagtaaagtagtt 212

                                                                       
Query: 305 gcttattgtggtgcctgcttataatcccagcactgtggagactgaggcaggactgccacg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gcttattgtggtgcctgcttataatcccagcactgtggagactgaggcaggactgccacg 152

                                                                       
Query: 365 atccagtctaggcttggacaagaccctgtctcaaggtggattttaaaaaaatattttgag 424
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ttccagtctaggcttggacaagaccctgtctcaaggtggattttaaaaaaatattttgag 92

                                                                       
Query: 425 gccgggcgtggtgcacgcctgtaatcccagcgctctggaggcagaggcaggcggatttct 484
           ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 91  gccgggcatggtgcacgcctgtaatcccagcgctctggaggcagaggcaggtggatttct 32

                                          
Query: 485 gagttcgaggccagcctggtctacagagtga 515
           |||||||||||||||||||||||||||||||
Sbjct: 31  gagttcgaggccagcctggtctacagagtga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no136_n24.g1 MSMg01no136_n24.g1 CHROMAT_FILE:
MSMg01no136_n24.g1 PHD_FILE: MSMg01no136_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:23 2005
         (642 letters)



>mm_chr4_107817416_107818457
          Length = 1042

 Score = 1147 bits (593), Expect = 0.0
 Identities = 629/641 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaatcagtaacccagaggttccttaaaggactagtgtccagaggtggaatctctcacag 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 ttaatcagtaacccagaggttccttaaaggactagtgtctagaggtggaatctctcacag 260

                                                                       
Query: 61  tggagtagaccctcccacatcaaccattaaccaaggaaatgctattgaaggtcaaggtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tggagtagaccctcccacatcaaccattaaccaaggaaatgctattgaaagtcaaggtga 320

                                                                       
Query: 121 gggagacattcctcagctgagattccttctaggtttggggcaagttgacaaaaacaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggagacattcctcagctgagattccttctaggtttggggcaagttgacaaaaacaagaa 380

                                                                       
Query: 181 aacaagcctttgaggtgtaatttgaaaaccaccaaaatggcacaaatggtgggagataag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaagcctttgaggtgtaatttgaaaaccaccaaaatggcacaaatggtgggagataag 440

                                                                       
Query: 241 agaatcaattgcttattcttgcttggagaagccacatgggtacatcttactttattctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaatcaattgcttattcttgcttggagaagccacatgggtacatcttactttattctct 500

                                                                       
Query: 301 tctgccttggggaacacataccacataaccacttcttcagagcacctttctgtttttctg 360
           ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 501 tctgccttggggaacacataccatataaccacttcttcagagtacctttctgtttttctg 560

                                                                       
Query: 361 aaatatttgtgaaaattatttttaattatgtgtattagggtgggggtatgtgtacattcg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatatttgtgaaaattatttttaattatgtgtattagggtgggggtatgtgtacattcg 620

                                                                       
Query: 421 tgcaggtgcccacagtggccagagcatcagatccccttgtgttggggccggccagcagct 480
            |||||||||||||| |||||||||| |||||||| |||||||||||||||||||| |||
Sbjct: 621 agcaggtgcccacagaggccagagcagcagatccctttgtgttggggccggccagcggct 680

                                                                       
Query: 481 cacatgtccggatttgagcctggaaggcatcttggaatctggaagaaaagagggagccta 540
           || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 catatgtccggatttgagcctggaagacatcttggaatctggaagaaaagagggagccta 740

                                                                       
Query: 541 ggtgggtagagaaacaatggaaccaaaacatgctagtctattcaaagttcaaattctaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggtgggtagagaaacaatggaaccaaaacatgctagtctattcaaagttcaaattctaat 800

                                                    
Query: 601 gtcgggaaacacaccttataaaaaggtggggaaaagtccat 641
           ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 801 gtcgggaaacacaccttataaaaaggtggagaaaagtccat 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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