Query= MSMg01no136_p19.b1 MSMg01no136_p19.b1 CHROMAT_FILE:
MSMg01no136_p19.b1 PHD_FILE: MSMg01no136_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:32 2005
(676 letters)
>mm_chr4_124016120_124017195
Length = 1076
Score = 1270 bits (657), Expect = 0.0
Identities = 668/672 (99%)
Strand = Plus / Plus
Query: 5 gaattcatgatgattactggtagctgagtctgtacaacaacctggtttaccttcaaccta 64
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgatgaatattggtagctgagtctgtacaacaacctggtttaccttcaaccta 264
Query: 65 agatggaaatcttctagtttcttggttttaggatgaagatgaaacctatttcaggatgct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agatggaaatcttctagtttcttggttttaggatgaagatgaaacctatttcaggatgct 324
Query: 125 tttccctccatgtgagaactaagtagaatgtatatccacccatttattttagttaaaaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttccctccatgtgagaactaagtagaatgtatatccacccatttattttagttaaaaca 384
Query: 185 agatgcccaaggctgaacaacttataaagcaaagtgggttattttgctgaatccaaactg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agatgcccaaggctgaacaacttataaagcaaagtgggttattttgctgaatccaaactg 444
Query: 245 cacggtgacaccctgacaaggtagtcctgtctgtgtatcaacatggctgagaaatagcaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacggtgacaccctgacaaggtagtcctgtctgtgtatcaacatggctgagaaatagcaa 504
Query: 305 accggagaagtaacaggatgacggtatataattaagatggaagcacaggggtggctttat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 accggagaagtaacaggatgacggtatataattaagatggaagcacaggggtggctttat 564
Query: 365 caaatgacaacttgctcctcagatactaatttagtctcaagagagctagagcttccacaa 424
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caaatgaaaacttgctcctcagatactaatttagtctcaagagagctagagcttccacaa 624
Query: 425 atcgtcagtaatcagttcctagcttaattctcccgtgaagtctcaccaagactcaaccga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atcgtcagtaatcagttcctagcttaattctcccgtgaagtctcaccaagactcaaccga 684
Query: 485 tccagcctccaccacctccaaactcaccacacaaggaaactctcttccaaaagccacaca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tccagcctccaccacctccaaactcaccacacaaggaaactctcttccaaaagccacaca 744
Query: 545 gtgtattctcatctgtccccatcatgacagcattaacccttttgtttagcaaataacact 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtgtattctcatctgtccccatcatgacagcattaacccttttgtttagcaaataacact 804
Query: 605 aggtttgagttaacttccctccttctcatctccatctganacactaagatcaaacagtat 664
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 805 aggtttgagttaacttccctccttctcatctccatctgaaacactaagatcaaacagtat 864
Query: 665 atgctccccaat 676
||||||||||||
Sbjct: 865 atgctccccaat 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_p19.g1 MSMg01no136_p19.g1 CHROMAT_FILE:
MSMg01no136_p19.g1 PHD_FILE: MSMg01no136_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:32 2005
(643 letters)
>mm_chr4_124157087_124158130
Length = 1044
Score = 1098 bits (568), Expect = 0.0
Identities = 618/654 (94%), Gaps = 32/654 (4%)
Strand = Plus / Minus
Query: 1 ctcagacggccaattcataaggagagatctattttaaacttggtcgaaaaggcttttgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ctcagacggccaattcataaggagagatctattttaaacttggtcgaaaaggcttttgca 587
Query: 61 gaaagtggtgggaagagagttcccaaggagaagcaggtgttctcacagcaggtcctgcac 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 586 gaaagtggtgggaagagagttcccaaggagaagcaggtgttctcacagcaggccctgcac 527
Query: 121 ctgagcagggagcccaggg------------------------ccccgctcaggcctagg 156
||||||||||||||||||| |||||||||||||||||
Sbjct: 526 ctgagcagggagcccagggccccccccccccccccccccccccccccgctcaggcctagg 467
Query: 157 agcctgggttgaccccctctggctacttttagcttgagtggctcaactgctgaggtcagg 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 agcctgggttgaccccctctggctacttttagcttgagtggctcaactgctgaggtcagg 407
Query: 217 tgccccccaggacagggattcaagaacaaacagtgttcttgggagatgaggcggggtgtg 276
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 406 tgccccccaggacagggattcaagaacaaacagtgttcttgggagatgaggcagg----- 352
Query: 277 tgtgtgctgtgtgtgacgatgtgggatgctaagtggccaccccaggcttcagcaagccag 336
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 -gtgtgctgtgtgtgaagatgtgggatgctaagtggccaccccaggcttcagcaagccag 293
Query: 337 cagctaccactataggcagctgctgctttgccctaccaggcaactcggggatactgctgc 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cagctaccactataggcagctgctgctttgccctaccaggcaactcggggatactgctgc 233
Query: 397 ctataaatgatgtattctagagctaggcccacaaagccaaaggatctgggctgctgtcac 456
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 232 ctataaatgatgtattctagagctaggcccacaaagccaaaggatc--ggctgctgtcac 175
Query: 457 acccatcccaaacctttgatggaggatgctcctcatgggtttaactcttggtttcccctt 516
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 174 acccatcccaaacctttgatggaggatgctcctcatgggtttgactcttggtttcccctt 115
Query: 517 gatggtgtgaagtggactgcagcagggagcaggtgggggagaagcttggtctcccaggtt 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 gatggtgtgaagtggactgcagcagggagcaggtgggggagaagcttggtctcccaggtt 55
Query: 577 cccgggaggaggttcagagaaggggtgtttgctgacatcctggctcccaccaca 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 cccgggaggaggttcagagaaggggtgtttgctgacatcctggctcccaccaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1044
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1034
Effective search space: 654522
Effective search space used: 654522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
