Query= MSMg01no137_f01.b1 MSMg01no137_f01.b1 CHROMAT_FILE:
MSMg01no137_f01.b1 PHD_FILE: MSMg01no137_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:58 2005
(554 letters)
>mm_chr4_83694045_83694998
Length = 954
Score = 996 bits (515), Expect = 0.0
Identities = 543/553 (98%), Gaps = 4/553 (0%)
Strand = Plus / Plus
Query: 4 gaattctattg-t-tgccgtaaacacatgaccaaaagcaacttggggaggaaagggttta 61
||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctattgctgtg--gtaaacacatgaccaaaagcaacttggggaggaaagggttta 261
Query: 62 tttcagcatacagttagtggattatgaagggaagtcacggtgggaactccaaacaggaag 121
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttttagcatacagttagtggattatgaagggaagtcacggtgggaactccaaacaggaag 321
Query: 122 aaacccagaggcagaacctaaagtcgaggccatagaaggacactgcttactggcttgctc 181
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 322 aaacccagaggcagaacctaaagtcgagaccatagaaggacactgcttactggcttgctc 381
Query: 182 atcgtgctttcttatacatctaccctgtaccattagcccatgattagcactgttcactgt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atcgtgctttcttatacatctaccctgtaccattagcccatgattagcactgttcactgt 441
Query: 242 gggcgaggcctgcccacatcagtcactgattatgtaaatgctccacaaactagcctacaa 301
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 442 gggcgaggcccgcccacatcagtcactgattaggtaaatgctccacaaactagcctacaa 501
Query: 302 ccaaatctgatgatagaggcttcttctcagctgagttcccctcttctcagattggcttta 361
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 502 ccaaatctgatgatagaggcttcttctcagctgagtttccctcttctcagattggcttta 561
Query: 362 gcttttatcaaattgacaaaaacaaaaacaaacaaaaacacaaaacaaaaacaaaaaaca 421
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gcttttatcaaattgacaaaagcaaaaacaaacaaaaacacaaaacaaaaacaaaaaaca 621
Query: 422 aactaagacaccctaaccagcccaatgaccaacaccaactgagatttatagctgtactcc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aactaagacaccctaaccagcccaatgaccaacaccaactgagatttatagctgtactcc 681
Query: 482 ttgtgagcgagaccccaagaacacactccagccctgaggtgggcttgactcagtatctca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttgtgagcgagaccccaagaacacactccagccctgaggtgggcttgactcagtatctca 741
Query: 542 ccctttatcgtct 554
|||||||||||||
Sbjct: 742 ccctttatcgtct 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_f01.g1 MSMg01no137_f01.g1 CHROMAT_FILE:
MSMg01no137_f01.g1 PHD_FILE: MSMg01no137_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:58 2005
(349 letters)
>mm_chr4_83846207_83846956
Length = 750
Score = 629 bits (325), Expect = 0.0
Identities = 343/349 (98%), Gaps = 1/349 (0%)
Strand = Plus / Minus
Query: 1 tcagcttcttcctatgggaa-cccccacatctgtcgggaactggggagcccctctctctg 59
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tcagcttcttcctatgggaaccccccacatctgtcgggaactggggagcccctctctctg 490
Query: 60 ctgcagagaagtcgtggagggtcgctgggtgcttttcctctcagggatcattcccacaag 119
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 489 ctgcagagaagtcgtggagggtcgctgggtgtttttcctctcagggatcattcccacaag 430
Query: 120 tctgtcagcagtcctctacgctgacaggagaaagggcggcctaggagagcactgttcttc 179
||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 429 tctatcagcagtcctctatgctgagaggagaaagggcggcctaggagagcactgttcttc 370
Query: 180 agctcgctgcctcaggagtgtgcagaggatgtagcctctcgggcatttgtaagtggctat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 agctcgctgcctcaggagtgtgcagaggatgtagcctctcgggcatttgtaagtggctat 310
Query: 240 ctaaaggttgtgttttgtttttaccacagccttaaacactcacaaagtgtgtactttctg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ctaaaggttgtgttttgtttttaccacagccttaaacactcacaaagtgtgtactttctg 250
Query: 300 gtatgttgaacctttggtttagaagcttttgtttttgtttgtttgtttg 348
||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 249 gtatgttgaacctttggtttagaagtttttgtttttgtttgtttgtttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 750
Length adjustment: 9
Effective length of query: 340
Effective length of database: 741
Effective search space: 251940
Effective search space used: 251940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
