Query= MSMg01no139_m11.b1 MSMg01no139_m11.b1 CHROMAT_FILE:
MSMg01no139_m11.b1 PHD_FILE: MSMg01no139_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:17 2005
(563 letters)
>mm_chr4_82075382_82076344
Length = 963
Score = 847 bits (438), Expect = 0.0
Identities = 460/474 (97%), Gaps = 11/474 (2%)
Strand = Plus / Minus
Query: 5 gaattccctcctagcctgccctactgagatgcccactcagctgggagagagcaggaggcc 64
|||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 463 gaattccctcctagcctgccctactgagatgcccgctc-----------agcaggaggcc 415
Query: 65 ttggcttctgcttcaggaagtcctacaagaggccaggggcaccctgacttatatgatcat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttggcttctgcttcaggaagtcctacaagaggccaggggcaccctgacttatatgatcat 355
Query: 125 aggccccaggagttgcagaagagaacatggaagtaaacaaattggactaatgcttgagta 184
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 354 aggccccaggagttgcagaagagaacatggaagcaaacaaattggactaatgcttgagta 295
Query: 185 aagagaaataaatagttcaactcatcttaagactttgtcattgtatgtgtcagtgtgtga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aagagaaataaatagttcaactcatcttaagactttgtcattgtatgtgtcagtgtgtga 235
Query: 245 gtgcaggtgactgtagaggacacacatgacagatgcccctggagctggagctgcagatac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 gtgcaggtgactgtagaggacacacatgacagatgcccctggagctggagctgcagatac 175
Query: 305 atgcactgatgggggtggttggacttggatcctctggaagagtagtatatgctctctgct 364
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 174 atgcactgatgggggtggttggacttggatcctctggaagagtagtgtatgctctctgct 115
Query: 365 gtatccagaaatgctgagacatttctccagtccctacatgctttattttattttttattt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 gtatccagaaatgctgagacatttctccagtccctacatgctttattttattttttattt 55
Query: 425 gtttcggtgttggagtttgaaccaaggatctcacaaatacccagaacatgctct 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 gtttcggtgttggagtttgaaccaaggatctcacaaatacccagaacatgctct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_m11.g1 MSMg01no139_m11.g1 CHROMAT_FILE:
MSMg01no139_m11.g1 PHD_FILE: MSMg01no139_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:17 2005
(611 letters)
>mm_chr4_81911682_81912691
Length = 1010
Score = 1166 bits (603), Expect = 0.0
Identities = 609/611 (99%), Gaps = 1/611 (0%)
Strand = Plus / Plus
Query: 1 ttggtgctaggattttacccacgtacacatacaaatgaacacatctgaagaaaacacctt 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggtgctaggattttacccacatacacatacaaatgaacacatctgaagaaaacacctt 260
Query: 61 gctagcatacagctgagtctagagcaggcagcgctgtttctggtctcagctgctgctttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctagcatacagctgagtctagagcaggcagcgctgtttctggtctcagctgctgctttt 320
Query: 121 agattcttgattaagtggcattgtcctttaaatgaccttgatgttgtgggagtcgcagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agattcttgattaagtggcattgtcctttaaatgaccttgatgttgtgggagtcgcagac 380
Query: 181 tggactcatccttccttcaaactgggactgccaaccaaacgcaaggttctcggcctttgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggactcatccttccttcaaactgggactgccaaccaaacgcaaggttctcggcctttgc 440
Query: 241 actctcaacttctgaggcttcctctcacagtttctgtttgctgatttgtaaatccacatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actctcaacttctgaggcttcctctcacagtttctgtttgctgatttgtaaatccacatg 500
Query: 301 atccaggattctttggagaaatttcttctcctgaggtgaagttgtctgtgaattctctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atccaggattctttggagaaatttcttctcctgaggtgaagttgtctgtgaattctctct 560
Query: 361 gcaaaggtcccacacaggctgctgggaaatggtgttttataaagttctctgaatcttggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaaaggtcccacacaggctgctgggaaatggtgttttataaagttctctgaatcttggt 620
Query: 421 ggaggaaaaagcctacaagttcaggaagccacccccattattcaggattcctttcccagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaggaaaaagcctacaagttcaggaagccacccccattattcaggattcctttcccagg 680
Query: 481 actgcttcctgcctggctccctccatcagatatgcctctgcagcagccagagtcaacctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actgcttcctgcctggctccctccatcagatatgcctctgcagcagccagagtcaacctt 740
Query: 541 cactgcttagcctgaagatttccttttttaactctttcatgccaatggtcatgtttagct 600
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 741 cactgcttagcctgaagatttccttttt-aactctttcatgccaatggtcatgtttagct 799
Query: 601 caaaatgaagt 611
|||||||||||
Sbjct: 800 caaaatgaagt 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1010
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1000
Effective search space: 601000
Effective search space used: 601000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
