Query= MSMg01no140_b07.b1 MSMg01no140_b07.b1 CHROMAT_FILE:
MSMg01no140_b07.b1 PHD_FILE: MSMg01no140_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:41 2005
(511 letters)
>mm_chr4_41107306_41108216
Length = 911
Score = 973 bits (503), Expect = 0.0
Identities = 506/507 (99%)
Strand = Plus / Plus
Query: 5 gaattccctttttctctgtactgtggtcattgtagatgtcggccaggcttcttcactatg 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccctttttctttgtactgtggtcattgtagatgtcggccaggcttcttcactatg 264
Query: 65 gttattctgtgtaattcataatgtgtaaaattctgttccttcttgtctcctcttccattc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttattctgtgtaattcataatgtgtaaaattctgttccttcttgtctcctcttccattc 324
Query: 125 tcctatccttctcccttttttgggactgggcttcatgtagcccaggctaacctcaaactc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcctatccttctcccttttttgggactgggcttcatgtagcccaggctaacctcaaactc 384
Query: 185 tttattctttctgccgccacctaacaaattctagatttctaaatatgaactaccagacat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttattctttctgccgccacctaacaaattctagatttctaaatatgaactaccagacat 444
Query: 245 ttcttattcatctttctatgttttagtttttaatttttgagacagggctctcactttatg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttcttattcatctttctatgttttagtttttaatttttgagacagggctctcactttatg 504
Query: 305 gctcatttgccatggaaattgctctgtagccccgtctggcttgaacatggcgcactgctc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctcatttgccatggaaattgctctgtagccccgtctggcttgaacatggcgcactgctc 564
Query: 365 tctcagtcttctaagtgctgagactatagcatttaacttttactaatttctctagaattt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctcagtcttctaagtgctgagactatagcatttaacttttactaatttctctagaattt 624
Query: 425 aatttcctgtttttaaaaaaagatctattttatgtatgagtgtttgctgcatgtatgtac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aatttcctgtttttaaaaaaagatctattttatgtatgagtgtttgctgcatgtatgtac 684
Query: 485 catgtgtgtgactggtacctgcagagg 511
|||||||||||||||||||||||||||
Sbjct: 685 catgtgtgtgactggtacctgcagagg 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_b07.g1 MSMg01no140_b07.g1 CHROMAT_FILE:
MSMg01no140_b07.g1 PHD_FILE: MSMg01no140_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:42 2005
(222 letters)
>mm_chr4_41230380_41231002
Length = 623
Score = 348 bits (180), Expect = e-100
Identities = 218/243 (89%), Gaps = 21/243 (8%)
Strand = Plus / Minus
Query: 1 ccttgaattgtctcttggag-aaaggtttcctgtttcctccaccaaggtttgaggtggga 59
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ccttgaattgtctcttgaagaaaaggtttcctgtttcctccaccaaggtttgaggtggga 248
Query: 60 cttgaacagccacagagggtcaggcttgcctactgtagatttggatatccctccctccct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cttgaacagccacagagggtcaggcttgcctactgtagatttggatatccctccctccct 188
Query: 120 ccttctctctctctctttctccccctctctccctccctccttctccctccttttttttg- 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ccttctctctctctctttctccccctctctccctccctccttctccctccttttttttgt 128
Query: 179 -----------ttgttggtttttttt--------tttttttnaaagaaagggtttctctg 219
||||| ||||||||| ||||||| ||||| ||||||||||||
Sbjct: 127 tttttttttttttgtttgtttttttttgtttttgttttttttaaagacagggtttctctg 68
Query: 220 tgt 222
|||
Sbjct: 67 tgt 65
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 623
Length adjustment: 9
Effective length of query: 213
Effective length of database: 614
Effective search space: 130782
Effective search space used: 130782
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
