BAC Information

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BAC

Clone NameMSMg01-140H24
Chromosome4 (Build37)
Map Location 38,117,887 - 38,278,625
singlet/doubletdoublet
Overlap geneLOC100039448
Upstream geneLOC621458, LOC277771
Downstream geneLOC665520, LOC100039487
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140H24.T7 (MSMg01no140_h24.b1)MSMg01-140H24.TJ (MSMg01no140_h24.g1)
ACCAG345618AG345619
length710692
length of high quality
(start - end)		249 (70 - 318)618 (75 - 692)
definitionCHROMAT_FILE: MSMg01no140_h24.b1 PHD_FILE: MSMg01no140_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:15 2005CHROMAT_FILE: MSMg01no140_h24.g1 PHD_FILE: MSMg01no140_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,278,377 - 38,278,625)(38,117,887 - 38,118,504)
sequence
NATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAGAGCGCGG
AATTCTAGCAAATACCTGAAAACATATGCTTATCTTTATCTACAGTGGTA
AGATAGGGGAATATATTACAGTATTAGGATAACATGGATTAGTATGTGAA
ACATAACTAGGAAGTTTCAAGTTATAGAGTTTTCTTAACTTTAATAAGGA
ATAATTCCACAGGAAATAAAATGAAATCACCATTTCAATGCTACAAGATA
CATAGTTCTGACTTCTGAGTAAATAAAACAAAATTTTCTTTATAAAGATA
CAATATTTTAGATTGTTTATTTTTTTTTAAAAATGTGTGAAACATGAGTA
ATAATGAGGTGATATGATTCCCCCACTCCCCCATATTTCTGCAATTTCTA
AGATATATAATCTTCAATTACCATTTTTACTATACACCATATTCCGTCGT
ATTACTCCTGTCATTCTCCTTTCCCTCCTTATTGTAATATACCACTACAT
ATTCACCATGTTTCTCCGCTCTTCTGTACTGTTCACTCTTGCTCGTTCAT
TCATATTCACGCAACATTCACTCCCCTCTCTTCAATTTTTCATCCTTTTC
TCCCTTTCTTTTTTCATCCCCCATTATTTTATACACACTACTATCCTCTC
ACTCTCATCCCCCCCCTTTTCCTCCCCCCCTTCCTATCTCTCTTCCACCC
CTCCATTTCA

CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTATTTACTATATGAGCTCCACAAG
CTTGCTGCTTTCCCCACAGTAAATGAGGCTTCCCTTTTTTCCATTAAGGA
AAAAGTCAACATTGCAGAAAAGAATGCAGAAAGATTGTAGGAAACAGAGG
ACAAGACAGTATTATGTAAGACAATATCAAATAATAATAATTCCAGAAAT
TACACTCATGAATTTTCACCAGGAAGACTAGCTAAACATGGCCTAGACAA
GAACAGCAACAGTAGATATGGCTCACTAGCCAAGAAACAGTCAAAAAATT
GCTTCAACTCTGCCCAAACATCAATAAGAAAATAAGGAATGCTGAGAGCA
GAATGATCTTCATAAGGGAAGAACACACCAATTGAATATTCAATTGTCAA
ATGCTGTGACTTGAAAACATACATACAAATAACATTACCCAGGCTGAGCA
AATTATATTTTCTTTTGTATAGCACAACATCTTTTTATCTACTATGTCAT
AATGCCAAGAACTTATTCTGTCAAAAGAATACTACACTGATGGACCAAGT
ATTTCTCAATAATTGCTAATGCCAATATAGGAGATCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_h24.b1 MSMg01no140_h24.b1 CHROMAT_FILE:
MSMg01no140_h24.b1 PHD_FILE: MSMg01no140_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:15 2005
         (249 letters)



>mm_chr4_38278177_38278825
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacatatgcttatctttatctacagtggtaagataggggaatatattacagtattagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aaacatatgcttatctttatctacagtggtaagataggggaatatattacagtattagga 390

                                                                       
Query: 61  taacatggattagtatgtgaaacataactaggaagtttcaagttatagagttttcttaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 taacatggattagtatgtgaaacataactaggaagtttcaagttatagagttttcttaac 330

                                                                       
Query: 121 tttaataaggaataattccacaggaaataaaatgaaatcaccatttcaatgctacaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tttaataaggaataattccacaggaaataaaatgaaatcaccatttcaatgctacaagat 270

                                                                       
Query: 181 acatagttctgacttctgagtaaataaaacaaaattttctttataaagatacaatatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 acatagttctgacttctgagtaaataaaacaaaattttctttataaagatacaatatttt 210

                    
Query: 241 agattgttt 249
           |||||||||
Sbjct: 209 agattgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no140_h24.g1 MSMg01no140_h24.g1 CHROMAT_FILE:
MSMg01no140_h24.g1 PHD_FILE: MSMg01no140_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:15 2005
         (618 letters)



>mm_chr4_38117687_38118704
          Length = 1018

 Score = 1172 bits (606), Expect = 0.0
 Identities = 615/618 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatttactatatgagctccacaagcttgctgctttccccacagtaaatgaggcttccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctatttactatatgagctccacaagcttgctgctttccccacagtaaatgaggcttccc 260

                                                                       
Query: 61  ttttttccattaaggaaaaagtcaacattgcagaaaagaatgcagaaagattgtaggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttttccattaaggaaaaagtcaacattgcagaaaagaatgcagaaagattgtaggaaa 320

                                                                       
Query: 121 cagaggacaagacagtattatgtaagacaatatcaaataataataattccagaaattaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaggacaagacagtattatgtaagacaatatcaaataataataattccagaaattaca 380

                                                                       
Query: 181 ctcatgaattttcaccaggaagactagctaaacatggcctagacaagaacagcaacagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcatgaattttcaccaggaagactagctaaacatggcctagacaagaacagcaacagta 440

                                                                       
Query: 241 gatatggctcactagccaagaaacagtcaaaaaattgcttcaactctgcccaaacatcaa 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatatggcacactagccaagaaacagtcaaaaaattgcttcaactctgcccaaacatcaa 500

                                                                       
Query: 301 taagaaaataaggaatgctgagagcagaatgatcttcataagggaagaacacaccaattg 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taagaaaataaggaatgttgagagcagaatgatcttcataagggaagaacacaccaattg 560

                                                                       
Query: 361 aatattcaattgtcaaatgctgtgacttgaaaacatacatacaaataacattacccaggc 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 aatattcaattgtcaaatgctgtgacttgaaaacatacatacaaataatattacccaggc 620

                                                                       
Query: 421 tgagcaaattatattttcttttgtatagcacaacatctttttatctactatgtcataatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgagcaaattatattttcttttgtatagcacaacatctttttatctactatgtcataatg 680

                                                                       
Query: 481 ccaagaacttattctgtcaaaagaatactacactgatggaccaagtatttctcaataatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccaagaacttattctgtcaaaagaatactacactgatggaccaagtatttctcaataatt 740

                                                                       
Query: 541 gctaatgccaatataggagatctttctttctttctttctttctttctttctttctttctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gctaatgccaatataggagatctttctttctttctttctttctttctttctttctttctt 800

                             
Query: 601 tctttctttctttctttc 618
           ||||||||||||||||||
Sbjct: 801 tctttctttctttctttc 818


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 116
Number of extensions: 51
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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