BAC Information

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BAC

Clone NameMSMg01-140I04
Chromosome4 (Build37)
Map Location 98,645,535 - 98,788,952
singlet/doubletdoublet
Overlap geneDock7, Angptl3, LOC665193
Upstream geneNfia, LOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1, Inadl, L1td1, Ankrd38, LOC100039541, Usp1
Downstream geneAtg4c, LOC665212, LOC638890, LOC100042589, Foxd3, Alg6, Itgb3bp, BC020077, Pgm2, Ror1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140I04.T7 (MSMg01no140_i04.b1)MSMg01-140I04.TJ (MSMg01no140_i04.g1)
ACCAG345626AG345627
length708707
length of high quality
(start - end)
582 (43 - 624)437 (72 - 508)
definitionCHROMAT_FILE: MSMg01no140_i04.b1 PHD_FILE: MSMg01no140_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:16 2005CHROMAT_FILE: MSMg01no140_i04.g1 PHD_FILE: MSMg01no140_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,788,392 - 98,788,952)(98,645,535 - 98,645,971)
sequence
TCATAATTTGCGGCGCTAAACGACTCCTATAGTTCGAAATCCGCGGAATT
CGTCCACCTTCCCCTATGCTTGCAACTAAGTAACACTGTTCCGGTTGTTT
AAGTAATTTGCTCAAGGTCACATGGGGAGGAGGCAGAAAGCAACTGGGTT
TCTATCATGAACAATGGAAAGGTCTGGAACAGTGTTACAGCGAAGTTAGA
CTTGGAGCAGCTGTATCTTTCCCCATGGACTCAAATATTCTGAAAACAGA
ACTGCAGCTAGCTCACATTTGGGCTCTAGCATACCTGCATTTAAGTACAT
GTTAAATATATACCCACCTCGAATGGGCTATCCTCACCGTAAACCAGTGT
TTTAAAGGCATCCAATCACCTGGTTCAAACCCAGGTTAGGGTACAGACGG
GAAGTCCTGGACCCACGTAATGAGTGCTTTCTGTTCTGTATGACTGGGCA
AGTGACCAGGCTTCAAGCTGAAGGTTTCGCTATGGTGAGAGACAATCTAA
CACGCTCCACAAGGACACAGAGGACATTTAGTAACTGCAAATAAGGTATA
TTAAATTCTTAAAACATTTAGGAGGGAAGGTGTCACAAGAAGCCAAAGGA
TTTTTCTTAGCTTCACAATTTCAGAACCCATTGCATTAGAACAAGACTGA
CACAGGTTCTATTTATAGAACATTTAAAGGATGGAAAACAGTTCATCTGA
TGCCTACG
CATGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCCTGTCTTCACCTTCTCACTGCTAGGAT
TGCAGGCCATGCTGCTGAGTCAGCTTTTTCTGTGGGTGCTAGAAATCCAA
ACTGAGCTCCTCATGCCTGAGTGGCCGCCCTCTTACTGAATGAGCAAGCC
ATCTCCCCTGCCTCTATTACTTAGAAAAATCCTCTATTTGACAGATGATA
CTATCAGCAGGCTGGGTCTTTCCTGAGGTCTCGATTTTTAACAGAGTGTC
TGCTCATGCACCTCATTTAGATCCCTCTGATTTCTCTCCCCTAGGTGAGG
ACTTGTAACAAAGGTTTCTTTTCTCTTCACACATTTGTTCTCGCCACAGA
CTATACAAACCATTCTGATTAAAGTGTACACACTCCAACCAAACCTTAGG
CTGTAGCATGCTACAGCTTCTACACCTATTCTCACAGGAAAACACACCAG
CAAGAGCTTGTCTTAGCAAAGAATTGCCGCTCTGGGTCTGCTCTGGTCAG
ATCTTCTCAACATGCTCATCTATTCTAAAAGAAGTCCTTTATTTCTGTTT
TCTAAAGTTACGTGTATGTATAGATATGATTATGAAGGGTGGATCTGAAG
GTCTGCACGAGGCATAAGATTCCTTGCAGTTGGAGTATAGGCAAGCGCGA
GCCGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_i04.b1 MSMg01no140_i04.b1 CHROMAT_FILE:
MSMg01no140_i04.b1 PHD_FILE: MSMg01no140_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:16 2005
         (582 letters)



>mm_chr4_98788171_98789152
          Length = 982

 Score = 1046 bits (541), Expect = 0.0
 Identities = 556/561 (99%)
 Strand = Plus / Minus

                                                                       
Query: 22  ctatgcttgcaactaagtaacactgttccggttgtttaagtaatttgctcaaggtcacat 81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ctatgcttgcaactaagtaacactgttccggttgtttaagtaatttgctcaaggtcacat 723

                                                                       
Query: 82  ggggaggaggcagaaagcaactgggtttctatcatgaacaatggaaaggtctggaacagt 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ggggaggaggcagaaagcaactgggtttctatcatgaacaatggaaaggtctggaacagt 663

                                                                       
Query: 142 gttacagcgaagttagacttggagcagctgtatctttccccatggactcaaatattctga 201
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gttacagcaaagttagacttggagcagctgtatctttccccatggactcaaatattctga 603

                                                                       
Query: 202 aaacagaactgcagctagctcacatttgggctctagcatacctgcatttaagtacatgtt 261
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aaacagaaccgcagctagctcacatttgggctctagcatacctgcatttaagtacatgtt 543

                                                                       
Query: 262 aaatatatacccacctcgaatgggctatcctcaccgtaaaccagtgttttaaaggcatcc 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aaatatatacccacctcgaatgggctatcctcaccgtaaaccagtgttttaaaggcatcc 483

                                                                       
Query: 322 aatcacctggttcaaacccaggttagggtacagacgggaagtcctggacccacgtaatga 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 482 aatcacctggttcaaacccaggttagggtacagacgggaagtcctggacccacttaatga 423

                                                                       
Query: 382 gtgctttctgttctgtatgactgggcaagtgaccaggcttcaagctgaaggtttcgctat 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gtgctttctgttctgtatgactgggcaagtgaccaggcttcaagctgaaggtttcgctat 363

                                                                       
Query: 442 ggtgagagacaatctaacacgctccacaaggacacagaggacatttagtaactgcaaata 501
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 362 ggtgagagacaatctaacacgctccacaaggatacagaggacatttagtaactgcaaata 303

                                                                       
Query: 502 aggtatattaaattcttaaaacatttaggagggaaggtgtcacaagaagccaaaggattt 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aggtatattaaattcttaaaacatttaggagggaaggtgtcacaagaagccaaaggattt 243

                                
Query: 562 ttcttagcttcacaatttcag 582
           ||||||| |||||||||||||
Sbjct: 242 ttcttagtttcacaatttcag 222


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no140_i04.g1 MSMg01no140_i04.g1 CHROMAT_FILE:
MSMg01no140_i04.g1 PHD_FILE: MSMg01no140_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:16 2005
         (437 letters)



>mm_chr4_98645335_98646171
          Length = 837

 Score =  814 bits (421), Expect = 0.0
 Identities = 433/437 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgtcttcaccttctcactgctaggattgcaggccatgctgctgagtcagctttttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctgtcttcaccttctcactgctaggattgcaggccatgctgctgagtcagctttttct 260

                                                                       
Query: 61  gtgggtgctagaaatccaaactgagctcctcatgcctgagtggccgccctcttactgaat 120
           |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 gtggatgctagaaatccaaactgagctcctcatgcctgagtggcagccctcttactgaat 320

                                                                       
Query: 121 gagcaagccatctcccctgcctctattacttagaaaaatcctctatttgacagatgatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcaagccatctcccctgcctctattacttagaaaaatcctctatttgacagatgatac 380

                                                                       
Query: 181 tatcagcaggctgggtctttcctgaggtctcgatttttaacagagtgtctgctcatgcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatcagcaggctgggtctttcctgaggtctcgatttttaacagagtgtctgctcatgcac 440

                                                                       
Query: 241 ctcatttagatccctctgatttctctcccctaggtgaggacttgtaacaaaggtttcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcatttagatccctctgatttctctcccctaggtgaggacttgtaacaaaggtttcttt 500

                                                                       
Query: 301 tctcttcacacatttgttctcgccacagactatacaaaccattctgattaaagtgtacac 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctcttcacacatttgttctcaccacagactatacaaaccattctgattaaagtgtacac 560

                                                                       
Query: 361 actccaaccaaaccttaggctgtagcatgctacagcttctacacctattctcacaggaaa 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actccaaccaaaccttaagctgtagcatgctacagcttctacacctattctcacaggaaa 620

                            
Query: 421 acacaccagcaagagct 437
           |||||||||||||||||
Sbjct: 621 acacaccagcaagagct 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)