BAC Information

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BAC

Clone NameMSMg01-140K12
Chromosome4 (Build37)
Map Location 47,525,915 - 47,526,153
singlet/doubletsinglet
Overlap genenone
Upstream geneTrim14, Coro2a, Tbc1d2, Gabbr2, Anks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
Downstream geneLOC100040788, Nr4a3, Stx17, Txndc4, Invs, Tex10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140K12.T7 (MSMg01no140_k12.b1)MSMg01-140K12.TJ (MSMg01no140_k12.g1)
ACCAG345734AG345735
length745726
length of high quality
(start - end)
241 (70 - 310)122 (193 - 314)
definitionCHROMAT_FILE: MSMg01no140_k12.b1 PHD_FILE: MSMg01no140_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:27 2005CHROMAT_FILE: MSMg01no140_k12.g1 PHD_FILE: MSMg01no140_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAGTCCGCGGAATT
CATGCTGGTTTTCCTAGATATGACTTAACTTTGTGATAGGGGCATTTTTT
TAGAAGTTGTGCCTCTTCTCATTGAGCCCTTAGCTGGCCCAGGGTGCTGG
GATGCTAAAGACGGGTCAGTCATCAAGATCTGGAAAAGGGGGTCCTGATC
AGTTTCCCATTCTCATCTCACTATGGGGACAGCAGAGATAAGCAGGTTGA
GATCTGAAGTAAGAATTCTGGTTCTGGTTTTTAATGGCTTAGATTATTAT
GGACCAGTACAGAGGGAGACGTTTTTTACCTTCTTCTATAAGTCTCATTT
AGGCATAATCTGGTTCTCAGAGATGCTTGTACATCTCTGTCTCCTTATTT
ACTGTACATATTCCTATACGAATGTGTTTACAAAGTCAGACTTTGGTTTA
TTTAGGACCTCGCTCATGGACATTTATTAGAATGTTTCTTGTGCCGGTTT
TGCTTTACAATTTTTCTCATTACTCCTTATTTTGTTTCCTATTTCGCCTT
GACCCTATTTCGCATCCTGCCCTTTTTTCCCGACCCTCTATTTTTTTTTG
CCCCCCATCCATCCTTTCTTTTTATTTTGTTACCCCTTTTGGTTATTCCC
TCATTTTTTTTTATGCATTTTTACCAATTTTTATTTCCCCATTTTTCCGC
CTTTTTTTCTTTTTTCCTCTCTTTCCACACCCTTTTTCCTCGCCT
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAAG
CACCTGAAAAAATGCTCAGCATCCTTAATCATCAGAGAAATGCAAATCAA
AACAACCCTGAGATTCCATCTCACATCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGGGACGATGCGGAGAAAGAGGAACACTC
CTTCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGT
CTGGTGGTTCCTCAGAAAATTGCTCATAGTACTACCGGAGGATCCCATTA
TACCTCTCTCTGGGCATACATCCCGAAGATGTCCCTCCTGGTACGAAGGA
CACATGCTCCTCTATGCTCATATCATCCTCACTTATAATACTCACAATTT
GTCTCTACTCCAGATGCCTCTCTCTCTAGCATCGTATATTTGCACGTGCC
ATATTCACACTATGGTACTATATCTACTTATTAAAAACATGACTTCATGA
TTACTCTCATCCCTCTGTCTGTATCCGTCACCCTCCTTCTCGTCNCGTCT
CTCTACTCCCTCCCTACATCTCTCATGATACTCCCTCTATTCATTCGTGC
TATACATCTCCATATCTTCATCACTCTCTTACTTCTTACTACATTTTCTT
TACCTCCTTGTTCCTTGTCTCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_k12.b1 MSMg01no140_k12.b1 CHROMAT_FILE:
MSMg01no140_k12.b1 PHD_FILE: MSMg01no140_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:27 2005
         (241 letters)



>mm_chr4_47525715_47526354
          Length = 640

 Score =  426 bits (220), Expect = e-124
 Identities = 235/240 (97%), Gaps = 1/240 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgacttaactttgtgataggggcatttttttagaagttgtgcctcttctcattgagccc 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 atgacttaactttgtgataggggcatttttt-agaagttgtgcctcttctcattgagccc 259

                                                                       
Query: 61  ttagctggcccagggtgctgggatgctaaagacgggtcagtcatcaagatctggaaaagg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 260 ttagctggcccagggtgctgggatgctaaagacgggtcagtcatcaagatctggaaaaag 319

                                                                       
Query: 121 gggtcctgatcagtttcccattctcatctcactatggggacagcagagataagcaggttg 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 320 gggtcctgatcagtttcccattctcatctcattatggggacagcagagataagcaggttg 379

                                                                       
Query: 181 agatctgaagtaagaattctggttctggtttttaatggcttagattattatggaccagta 240
           |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 380 agatctgaagtaagaattttggttctggtttttaatgggttagattattatggaccagta 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 640
Length adjustment: 9
Effective length of query: 232
Effective length of database: 631
Effective search space:   146392
Effective search space used:   146392
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)