BAC Information

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BAC

Clone NameMSMg01-140P08
Chromosome4 (Build37)
Map Location 10,329,532 - 10,329,765
singlet/doubletsinglet
Overlap genenone
Upstream gene4933402J24Rik, Asph, Gdf6, 4930448K20Rik
Downstream geneLOC666840, 1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140P08.T7 (MSMg01no140_p08.b1)MSMg01-140P08.TJ (MSMg01no140_p08.g1)
ACCAG345960AG345961
length7231,421
length of high quality
(start - end)
234 (64 - 297)---
definitionCHROMAT_FILE: MSMg01no140_p08.b1 PHD_FILE: MSMg01no140_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:51 2005CHROMAT_FILE: MSMg01no140_p08.g1 PHD_FILE: MSMg01no140_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXCTANATCGAGAAGAGCCGCGGAATTC
TCAGGACTTCCTGAAATCCACCAACATTTTCCATTTAGCACTTGTGAGGT
TATTGAGGAACTGTTCAAGGAGACAGAACATTTCCATGCCTGCTCAGTTC
TATGAGCAGCTCCTATACCTGCTCTGTTACTTGGCCAATAATGCCAACAT
TGTGAATCAGCAACACGTTCTTCTGTGCCATGTTGGAAATCTGTGCCTTT
TCCTGGGCTTCCTGTTGTTTCTTTTGAGAGAATGCACATTGTCCTAATTC
AAGAATAAACAAATATTTTCTGTAAAGGAACTAAATATTTTGTGCTTTGA
GGATAATACAACTGTATTATCTGTTGTGTTGTAACAAACTGTATAAACTG
TTGTCTTTGCACATACAGTAGCCATAGATATATGGTAATGTGTGTATGAG
GCTGTTACCACACGACTTTGTGATTAAACGTGTTGACCGTGATTTGATTG
TCACACTCTACTTTGCCCACTCTGTTCTACATTTTAAAACACAATGAAAT
TTACTGTCTTCCCTTGTTTATCATCTATTTCCTTGCACTGTCTTATTCTT
CCCCTTTTTAACCCACCAATATCCTTCTCTCTCATTTTCTTATGATATTA
CCTCACTCCTCTCATTTTTTACCCACCCCCTTTCCTTTGTCCTTTACTAT
CCTCTATTTTTCTCCCTGTTTCC
TTTTTTTTTTTTTTTTTTTNNNTTTNTNNTTNNNTNNTTTCTGTCTCTTT
TCCTTTATAAACAGGTCGGGCGCGCGNNCNGTTNTGTCNTCTTTTCTTTC
TTTCTCCCTCGCCNNCTGGGTGGTCGTGTGTGCGTGCGCGCCGTCGCGGC
GCGCCCCGCGTCCGCGTGCGCGGCGCGGCGCCCGCCTGCGCGCGCCNCGT
CTCCGTTTGGCCGCGCGCGTCCCGCGCGTTCNTCTCGCCCGCGNGTGATG
GTTCTGTGGTGTGTTGCGCGGCTGGAGTGGCGGCGTCGCGAGTATTGGTA
GGGGTTGTGATATGGCGCTCGCGCGCCGACCCCGGCTCTCCGCGTTCTTG
GGCGCTCTCTGNGGCTGCTGCGGCGGGNTCGCACCGTGAGTGCGGNCCCT
GGTCTCGGCGTGTGTCNCCGGACCGCGNGCCTGCTGCGGCCGCGCACATC
CCATCGCGACGNATCGACATCCCCCGTGCGAGAGGCGGCTCCCAGGCGAG
TGGACGACACGTACCTTACCACCGCGAGGGCCGGTATCAATTTTAATATT
ACACCATCGTTAATATCGTTATACTTGGTTCTTCTTTNGAGGGTAGAGGG
AACAANGCGGGTGTGCGCGGCGAGGGCATGGCTGTCAGAGAGAGGCGAGG
CGTGCTCGTGGTTTAAACTGATAACACATATGTTCGTGCCCGCCGGCCCN
CCGTNCTATTAATCGTCGTGCGATCGCGGCGCTGATGATTATTGATGTTA
TGTGGCATGNGCTCATGCCTCACCACCACCCACACATGTTCTACCGCACT
GCTCCCTGTGCTCTATATGTATAGTAGTGGTGTCTCTAGCGCGCAGTACG
TATCGAATTATATAGTTATTGACCGTCCCTCTGCGCACCTGCGTTCCGCG
GCGCGTCGCTCGTAGTCTGACTCGAACGGCAACTAGCATGAGTATGAGAG
ATATGTTATACCCGACATGTGCACGATATATAAATGATTAAGTAAGGACT
ACACGATAGTATAATAATCGTGAGAGACACGACCTATGTGATAGAAGTAG
AGGTGATGTAGGAGGGATAGTGTGATGTGAGATATTACGGGANCGCGATG
ATAGACACAGAGACGAATGATAAATACTATATCNATACGATTGAGAGTAG
CACGTATATATAATATGAGATCGATACTATATAGAGCAGAACACGCCATA
CACACTAATCTACTATTCTATGATTAGATGACATTACGTTATATGATAAC
AGCATGCTGAAGAGACATAGTTCATCGACCATNTGTAANATAATACACAN
ACGAGATTCAACCATGTAGATATTATGATCGATAATACGAATATACGAGA
TGGTGATGGTAATATGTATAAATCTATTATCATGGAATACGNATAGCTAT
AGAATGGTAGATATAGAATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_p08.b1 MSMg01no140_p08.b1 CHROMAT_FILE:
MSMg01no140_p08.b1 PHD_FILE: MSMg01no140_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:51 2005
         (234 letters)



>mm_chr4_10329332_10329965
          Length = 634

 Score =  437 bits (226), Expect = e-127
 Identities = 232/234 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatccaccaacattttccatttagcacttgtgaggttattgaggaactgttcaaggaga 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 434 aaatccaccaacattttccatttagcacttgtgaggttgttgaggaactgttcaaggaga 375

                                                                       
Query: 61  cagaacatttccatgcctgctcagttctatgagcagctcctatacctgctctgttacttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cagaacatttccatgcctgctcagttctatgagcagctcctatacctgctctgttacttg 315

                                                                       
Query: 121 gccaataatgccaacattgtgaatcagcaacacgttcttctgtgccatgttggaaatctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gccaataatgccaacattgtgaatcagcaacacgttcttctgtgccatgttggaaatctg 255

                                                                 
Query: 181 tgccttttcctgggcttcctgttgtttcttttgagagaatgcacattgtcctaa 234
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 254 tgccttttcctgggcttcctgttgtttcctttgagagaatgcacattgtcctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)