BAC Information

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BAC

Clone NameMSMg01-141D07
Chromosome4 (Build37)
Map Location 32,143,435 - 32,249,002
singlet/doubletdoublet
Overlap geneLOC665228
Upstream geneLOC100040891, Map3k7, LOC665218
Downstream geneLOC665232, Bach2, Gja10, Casp8ap2, Mdn1, Lyrm2, Ankrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141D07.T7 (MSMg01no141_d07.b1)MSMg01-141D07.TJ (MSMg01no141_d07.g1)
ACCAG346141AG346142
length1,2491,327
length of high quality
(start - end)		705 (123 - 827)119 (132 - 250)
definitionCHROMAT_FILE: MSMg01no141_d07.b1 PHD_FILE: MSMg01no141_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:20 2005CHROMAT_FILE: MSMg01no141_d07.g1 PHD_FILE: MSMg01no141_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,248,298 - 32,249,002)(32,143,435 - 32,143,549)
sequence
NCCGATTTTNNNNNCGCATTGGNCCTAAGACTCCTAAGGGAGAGGATCCG
CGGAATTCAGCAGTAGAGAGTCCCCCCTTAAACCTTCATTAGTGGCTCAG
ACTCACTCCCTGACACTCTCCTGGATGGCATATTCAAAATCCACTTTAAC
CAATGTGTCGTGAAATGGAGTTGGACAAGAGCACCCCCACCCCCACAACT
CTGATTATTCTCTACTCCTGAATTTCACGGAAGGCAGTGATAGATGAGGA
ATGCCAGGCTCTCTGTGATGATTGCTTACAAAGAGAAGAGCGCTGCATCC
TGGTAACATTGCGATGTCTGGGACAATACAGAGCAAGGCGCAGTTTGTTC
TTCTCCATGGAGTATCAGAGCCGCTGGCTGATTTTGTAACCACACTAAGA
AAAGACCAGTTTCCTGGTTAGCAGCGACATTGTTGCCTTGAGTGGGGCAG
AGTAAAGAAAGGGACGGAGAGGTTTTGTCTCAGCCTTGACGAATAGGTTC
ATTCAGAAGTCCGTGTACCCCGTGAGGGCTAGTTCCATGATAGTTCTAGC
TTTATAGACTACATAAAAGATGGATTCCAGGCAAGTAAATGGTCTGACAA
TTGGGCCTTATGGGAGTGGGACACTTTAGATCTTGATAGCGCCACTCAGA
AGGGGGCAGAAAGAGGAAGGCATAGTGGCACACACCTTTAATACTAGCAT
TTTGGAGGCTGAGGCTGTTGCCTCTCTAAGTTCAAAGCCAGCCAGAGGCT
ACACAGATGCTGTCTCANATAAAGGGCTGTGGAAAGGAAAAGGCAGAACT
CACACCAGATGTAAGGAGCAAGACTGGTGGTGGTCACATCAGATAGAATA
TGGCAGCCATAGTACCCCCCTTCAGAATAGCTCTGCTGGGNAAAAGTTGG
GAGAGATTTGGGGATGAAGGTGGCCTCTAGGAATCTTTTGTATTTGCTGA
ACAAGCCCAGGACTTGGGGTCTGGTGGTGATTTGCTTGAACTTTAAGCCC
AATTTTCGGTAACCTGTGGTTAAAAGTTCAAAGGGAAACTTTTCTCTCTT
TTCTTCCTACCCCCCCTGTTTCTAAATAGTCTCTGTTTGTACCAAACCCT
CTTTCTTTTTGTTATAAAAACCTTTTATACCCTTGGGGAGGTGGGCTTTT
AAATATTTTCTAACTCTTAATTGACTTTTTTCCTNATATTAGTCTTCTCT
TTTCTCTAATAACACTAGCATTTTATTTCTACTCTTCTTTCTAACTCTA

TTTTTAAAGCTAGGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTATGAGATGGTTGGGCTCTGATCCCAAGTG
AAGGTGTGTGCCTGCTCAGGGTGGGGTTCCCGTGGGGGTGGACGGGGTAC
TGTGCTCCAGATAAAGAGAAAGGGCTGGGAAAATCTGATCTCTGCACTCA
GTTCTGACAACTCTGGTTCTCATCAGGGGAGTGGCCCTCCTCCTCATTGC
CTCTGGGTTGAGCCCTGCTTGCTTAGATCCTAGAATCCTTTGAAAGCTCA
AATAGCATAAGCCTGCTGACGTTAGTCCTACTCGTGTAAATGTATCCCAA
AACTGCACATCTTCATCTGGGTTCGATACCCACGTGCGTGCTCATGACTT
TTTTTTATTAGACTGCGTCAGAACAAGATGATATCACTGTGGTTAGCCCC
TAGATGAAACCCCTCCCCTTGATATTCCATCTTTCCTGTAAAATTATTGA
TCTGTTATACTTGACATCTTATTTTATTCCCTGTAAATGACTATCTTTTT
TAATACTTTAAAGATCTTCCTTTTTCCCTTTATCTTACTCCTTTCTTCTT
CTCAATATACTATCTTCTTTATTATTTTTTTATTTTTTTTTTTCCTTTAT
CTTATTATTTTCTTTATTCTTTTTCCTCCTATCCTATATTTCATTTATTT
AATTCTCCTTATTTCTCTTAATTCTTCATTATTTCTTTATTATTAATTCT
TTATCTTTATATCTATTTTTAATTTTATTCCCTTTTTTTTATTATTATTC
TTTTTTATTTCATATTTTTTATTCTCTTTTTCATATTTCCTACTTTTTAT
TTCTTTCCTTATTTCTAATCCTATTATACATCTTTCATTTTATTTCTTAT
TTTTAATATATTTTCTATACCTTTAACCTTTTCTATTTCTATTTTCTTAT
TCCTTATATCTATTTCTACTAATCTACTTATTCTTTTTTCTTATTTTTTT
TTTTACTAATTATTTATTTTTTGTAACTTCTTCTTTCCTTTCTTCCATCA
TCCTTTTTTATTTTATTCATTACTATCTTATCTCTATACTATTACATTTA
ATATTATCATTCATTTTATCTATCATTCCTTTCATCTATTATATTGATTC
ATTTTAATATCTTCTTTTACTATATCTATCTTTACATTTTTTTTATCTAT
ATTTTATATTATCCTTATCTTTTATATCTCTTCTTACTATATAAACTTTC
TCTTTCAATTACTTTCCAACACTCTACACGTATATATAATTCCCTAGACA
ACATATATACTTTCTGTACAATATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_d07.b1 MSMg01no141_d07.b1 CHROMAT_FILE:
MSMg01no141_d07.b1 PHD_FILE: MSMg01no141_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:20 2005
         (705 letters)



>mm_chr4_32248257_32249361
          Length = 1105

 Score = 1342 bits (694), Expect = 0.0
 Identities = 702/705 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggatggcatattcaaaatccactttaaccaatgtgtcgtgaaatggagttggacaagagc 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ggatggcatattaaaaatccactttaaccaatgtgtcgtgaaatggagttggacaagagc 687

                                                                       
Query: 61  acccccacccccacaactctgattattctctactcctgaatttcacggaaggcagtgata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 acccccacccccacaactctgattattctctactcctgaatttcacggaaggcagtgata 627

                                                                       
Query: 121 gatgaggaatgccaggctctctgtgatgattgcttacaaagagaagagcgctgcatcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gatgaggaatgccaggctctctgtgatgattgcttacaaagagaagagcgctgcatcctg 567

                                                                       
Query: 181 gtaacattgcgatgtctgggacaatacagagcaaggcgcagtttgttcttctccatggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gtaacattgcgatgtctgggacaatacagagcaaggcgcagtttgttcttctccatggag 507

                                                                       
Query: 241 tatcagagccgctggctgattttgtaaccacactaagaaaagaccagtttcctggttagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 506 tatcagagccgctggctgattttgtaaccacactaagaaaagaccagcttcctggttagc 447

                                                                       
Query: 301 agcgacattgttgccttgagtggggcagagtaaagaaagggacggagaggttttgtctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agcgacattgttgccttgagtggggcagagtaaagaaagggacggagaggttttgtctca 387

                                                                       
Query: 361 gccttgacgaataggttcattcagaagtccgtgtaccccgtgagggctagttccatgata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gccttgacgaataggttcattcagaagtccgtgtaccccgtgagggctagttccatgata 327

                                                                       
Query: 421 gttctagctttatagactacataaaagatggattccaggcaagtaaatggtctgacaatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gttctagctttatagactacataaaagatggattccaggcaagtaaatggtctgacaatt 267

                                                                       
Query: 481 gggccttatgggagtgggacactttagatcttgatagcgccactcagaagggggcagaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gggccttatgggagtgggacactttagatcttgatagcgccactcagaagggggcagaaa 207

                                                                       
Query: 541 gaggaaggcatagtggcacacacctttaatactagcattttggaggctgaggctgttgcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaggaaggcatagtggcacacacctttaatactagcattttggaggctgaggctgttgcc 147

                                                                       
Query: 601 tctctaagttcaaagccagccagaggctacacagatgctgtctcanataaagggctgtgg 660
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 146 tctctaagttcaaagccagccagaggctacacagatgctgtctcaaataaagggctgtgg 87

                                                        
Query: 661 aaaggaaaaggcagaactcacaccagatgtaaggagcaagactgg 705
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  aaaggaaaaggcagaactcacaccagatgtaaggagcaagactgg 42


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space:   761025
Effective search space used:   761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no141_d07.g1 MSMg01no141_d07.g1 CHROMAT_FILE:
MSMg01no141_d07.g1 PHD_FILE: MSMg01no141_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:20 2005
         (119 letters)



>mm_chr4_32143235_32143753
          Length = 519

 Score =  223 bits (115), Expect = 4e-63
 Identities = 115/115 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgggggtggacggggtactgtgctccagataaagagaaagggctgggaaaatctgatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgggggtggacggggtactgtgctccagataaagagaaagggctgggaaaatctgatct 260

                                                                  
Query: 61  ctgcactcagttctgacaactctggttctcatcaggggagtggccctcctcctca 115
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcactcagttctgacaactctggttctcatcaggggagtggccctcctcctca 315


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 519
Length adjustment: 8
Effective length of query: 111
Effective length of database: 511
Effective search space:    56721
Effective search space used:    56721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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