Query= MSMg01no141_l05.b1 MSMg01no141_l05.b1 CHROMAT_FILE:
MSMg01no141_l05.b1 PHD_FILE: MSMg01no141_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:24 2005
(654 letters)
>mm_chr4_53662771_53663824
Length = 1054
Score = 1226 bits (634), Expect = 0.0
Identities = 649/654 (99%)
Strand = Plus / Minus
Query: 1 tgatggagtaaccccagttggtagaatcctggctatttccctaatgatttcacatacctg 60
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 tgatggagtaaccagagttggtagaatcctggctatttccctaatgatttcacatacctg 795
Query: 61 atatttacctggctaatttatctttatctcacctggacttttcacatatatttactatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 atatttacctggctaatttatctttatctcacctggacttttcacatatatttactatca 735
Query: 121 accacacttctaatatccaaaaaatcaggtgaagtatattctagaattctaccacacttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 accacacttctaatatccaaaaaatcaggtgaagtatattctagaattctaccacacttg 675
Query: 181 tgctgtttttactgttcactttcagatcatatgatctgataaatggaggcccttcaaatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tgctgtttttactgttcactttcagatcatatgatctgataaatggaggcccttcaaatc 615
Query: 241 cagatctcatgctagaacaggaacatgacaatttaaatagaagaatttgaagataaagaa 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 614 cagatctcatgctagaacaggaacgtgacaatttaaatagaagaatttgaagataaagaa 555
Query: 301 gtgtgacaagaatcactgtatggttttaccaagggctattttgttgttgttgtttccaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gtgtgacaagaatcactgtatggttttaccaagggctattttgttgttgttgtttccaat 495
Query: 361 tatattagcccaacttaaggactttaatatggtatgtttaaaaatagtgtgactaaaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tatattagcccaacttaaggactttaatatggtatgtttaaaaatagtgtgactaaaaga 435
Query: 421 attgttttccccagatttataaaaattcaccactacctactaaatactttactacctaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 attgttttccccagatttataaaaattcaccactacctactaaatactttactacctaaa 375
Query: 481 ttattcttcaaggttatccacattattttgtcagtaagcaagcatttgaagtaggcctat 540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttatacttcaaggttatccacattattttgtcagtaagcaagcatttgaagtaggcctat 315
Query: 541 agaaacttatgacctggctcagatactgaagagcagctaaaataaactgcccataagcat 600
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 314 agaaacttatgacctggctcagatactgaagagcagctaaaacaaactgcccataagcat 255
Query: 601 gtgaaaatgtagcttatttaaactgaacattaaagaaaaacagaattaaaataa 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gtgaaaatgtagcttatttaaactgaacattaaagaaaaacagaattaaaataa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no141_l05.g1 MSMg01no141_l05.g1 CHROMAT_FILE:
MSMg01no141_l05.g1 PHD_FILE: MSMg01no141_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:24 2005
(713 letters)
>mm_chr4_53503404_53504516
Length = 1113
Score = 1286 bits (665), Expect = 0.0
Identities = 686/693 (98%), Gaps = 2/693 (0%)
Strand = Plus / Plus
Query: 22 agccagtgcctcctcacttacctccctccactctccag-attaagagtgagcttcacgat 80
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 222 agccagtgcctccttacttacctccctccactctccagtattaagagtgagcttcatgat 281
Query: 81 gtaagtcttgggtcttttttttgcaggaaggacaaagtgttgtgctcacagaggtgataa 140
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gtaagtcttgggtcttttttt-gcaggaaggacaaagtgttgtgctcacagaggtgataa 340
Query: 141 tgagtcagacctcacatgctgttgttctcgagttgtaagccccatttatcctttgctgtt 200
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 341 tgagtcagacctcacatgctgttgttctcgggttgtaacccccatttatcctttgctgtt 400
Query: 201 cacttactggatcccctttctgaccaaatcacctgcagaatgaccacagctggctgtgat 260
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 401 cacttactggatcccctttctgaccaagtcacctgcagaatgaccacagctggctgtgat 460
Query: 261 gctccacagtgctcttgactagcttctgtggctctgcttaacttactcagacctctgcag 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gctccacagtgctcttgactagcttctgtggctctgcttaacttactcagacctctgcag 520
Query: 321 gagacgtagagaatgtatgataaactccctgcatgcagcttagctcagagcaggtgttca 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gagacgtagagaatgtatgataaactccctgcatgcagcttagctcagagcaggtgttca 580
Query: 381 aaatggaggcacttccatgaatgtcacaaaatgcaaaggcgatcccaaggtgtggaagat 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 aaatggaggcacttccatgaatgtcacaaaatgcaaaggcgatcccaaggtgtggaagat 640
Query: 441 tgggatttattttcttccagtagcaaacggtattcccctgtggacttcatgatgttccta 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tgggatttattttcttccagtagcaaacggtattcccctgtggacttcatgatgttccta 700
Query: 501 tgcagaccagggaaaagagtgtaatagtgtttgctaaaagggaatatagctctttgttcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tgcagaccagggaaaagagtgtaatagtgtttgctaaaagggaatatagctctttgttcc 760
Query: 561 cttcagcagacaaaagaaactcattatcatatcaagtggtgactgctgctgttgaaatgg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 cttcagcagacaaaagaaactcattatcatatcaagtggtgactgctgctgttgaaatgg 820
Query: 621 tttatttgtgtgtgtttttttctgtttcttttctagggatttatttgtggcttttcagta 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 tttatttgtgtgtgtttttttctgtttcttttctagggatttatttgtggcttttcagta 880
Query: 681 gcaacaggtgcagcagcaagactagtgtcagga 713
|||||||||||||||||||||||||||||||||
Sbjct: 881 gcaacaggtgcagcagcaagactagtgtcagga 913
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1113
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1103
Effective search space: 775409
Effective search space used: 775409
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
