BAC Information

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BAC

Clone NameMSMg01-141M03
Chromosome4 (Build37)
Map Location 30,563,920 - 30,564,371
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665185
Downstream geneLOC619906, LOC100040864, LOC100040891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141M03.T7 (MSMg01no141_m03.b1)MSMg01-141M03.TJ (MSMg01no141_m03.g1)
ACCAG346548AG346549
length1,0861,200
length of high quality
(start - end)		512 (86 - 597)641 (92 - 732)
definitionCHROMAT_FILE: MSMg01no141_m03.b1 PHD_FILE: MSMg01no141_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:31 2005CHROMAT_FILE: MSMg01no141_m03.g1 PHD_FILE: MSMg01no141_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTCTTTNNNNNCCATTGGGCGCTAAGACTCCTATAGGGAGAGGATCCG
CGGAATTCTTTGTTAGCTCTGAGCATTTAAGTTTATGTGGTTATTTGTTT
TTCTGAGGTCCACCTTCTTGAACTCTTTGTACATATTGGATATTAGTCCC
CTATCTGAATTAGGATAGGTAAAGATCCTTTCCCAATCTCTTGGCGATCT
TTTTGTCTTATTGACAGTGTCCTTTGCTTTACAGAAGCTTACAATTTTAT
ACCCATTTGTCTATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATT
CAGGAATTTTTCCCGTGTCCATATCTTTGAGGCTTTCCCCCACTTTCTCC
TCTATAAGTTTCAGTGTCTCTGGTTTTATGTAGAGTTCCTTGAACCATTT
ATATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTAGCATTCTTC
TACATGTTAACCACCAGTTGTGCCAGCACCATTTAAAAAAAAGAAAGACA
GCATTTTCAACAAATGGTGCTGGCACAACTGGTGGTTATCATGTAGTTTC
TTTGAATCTTAATGACTTACATGTGCTTCCATATGAACTTTAAGATGCTT
TATTTTTATGACCAAAATTGTTCTTGTTTTGCCATGAATATTGCACTGAA
TCCATACAATAGTTTCTGAATGGTGCCATTTTCATAACTATATTCTTTCA
GTTTATGTCGTGGTATATCATTTCTGCTATTCTAGAAACTTTTTTCACTT
TTCTTCAGTGATTGACGTTTTTCTTGTCTTATGCTTTTCATTTTCCTGCT
TAAGCTTACCTCTATATGCCCTTTTCTTACCTTCTTATCTTGGTTTTTAT
ATTTTTCTTCACTCTCTTTGCTCTATTTATTCTACTTTCCTCCCTCTTTT
GCTCTTTCTCTTTTTTTTCTACTTTTTTTTTCCTCTTCTTTTTTTTATCT
CTTTTCATTCTTTGTTCTCTCCCTTATTCTTTCTTATTCTTTACATTTTT
TTATCTCTTTTCTTCCCCTTTATTTCTCTTCTCTTATATTTTCATTCTTC
TCTATTCTTTTTTTCTCTTCTTTTATCTCTTTTATC

NCCCTTTTCTTTTNTTAACATGTGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTATAATGTATCCATGTTGT
TCTGCAAAGATAGAATGTGTCATTTCAATTCTCTTTTATCCATTGAGGTT
TCCTTTATTACGAAACTATATGTTCTCTTTTGTAGAAAAATCTATGAGGT
GCTGAGACGGTATACTCTTTTGTGTTTGTGTTAAATAGTCTATAGATATC
TGTTAGGTCCATTTTATTCATAATGACTGTTGCATTATTTCTCTGTTTAG
CTTATGTCTGGATGACCTGTCAGTTGGGGAGAGTGTGATGTTGAACTCCC
CCACTATTTATGTGTGGGTTTGATGTATGATTTGAGCTTTAGCAATGGTT
TTTCTTTTCTTTTCTTTTTTATTTTACAAATATAGTTGCCCTTGTATTTG
AAGCATAGATATTTAATAATATTATTTTTATTTTTTTACACAAATCATAA
TTATATATTCAAACCATCATGTTATATATGGGAATTTGGTCAAGGATATA
AATAGTGTCATTATCTGGTATTATGTATACTAAAGTACAAATTGGATGGA
GAATATTTAGATCAGCTACATAAAAGGCACATGTATCAGATACCAGACAA
AAGGATTTTTTTTTAGAAAACCAGATACACATTTTTGTAACAGTTCTACA
GTCTGTAAATATAAGAAGAATGGTGATTTCCAAGTAAATAGCATTGAGTT
TTAAGAATAGAATCTTTACCCCTGTCTTGCATATTTTGTTCATTGACTGT
AGGTATATAATTTTTGAAGTATGTATTTATAGAGTTGCCTAGTATTATTA
GATCATACTTCATTTTTTATAAATTTTTAAGAATTGGCGGATGAGTTTTT
ACTATGTGCTTATATGTGCTGGGTAATTAATTTTTAAGTCTTATTTGATC
TTGTATCCTTCAGTTTATTTTATTATTTTCTTTTTTTGTAATTCTCCTTT
GATTTTGGGTTTTTTTGTTGGTCTCCCCATAATAATTTTTGTTCTTAAAT
TCTCTCTCCTTTATTATTCTGTTTCACTTGTATGTTATTTTATTTTTTTC
CTCCTTATGATGCCTTGTTGTCTATTCATTATCTGTGATACTTTTTTTTC
TCTTTCCTTCTCCATTTCCTTTCTTTTTTCTACATCACTTTTTCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_m03.g1 MSMg01no141_m03.g1 CHROMAT_FILE:
MSMg01no141_m03.g1 PHD_FILE: MSMg01no141_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:32 2005
         (641 letters)



>mm_chr4_30563333_30564371
          Length = 1039

 Score =  851 bits (440), Expect = 0.0
 Identities = 450/454 (99%), Gaps = 2/454 (0%)
 Strand = Plus / Minus

                                                                        
Query: 188  gttgcattatttctctgtttagcttatgtctggatgacctgtcagttggggagagtgtga 247
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1039 gttgcattatttctctgtttagcttatgtctgaatgacctgtcagttggggagagtgtga 980

                                                                        
Query: 248  tgttgaactcccccactatttatgtgtgggtttgatgtatgatttgagctttagcaatgg 307
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 979  tgttgaactcccccactatttatgtgtgggttcgatgtatgatttgagctttagcaatgg 920

                                                                        
Query: 308  tttttcttttcttttcttttttattttacaaatatagttgcccttgtatttgaagcatag 367
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919  tttttcttttcttttcttttttattttacaaatatagttgcccttgtatttgaagcatag 860

                                                                        
Query: 368  atatttaataatattatttttatttttttacacaaatcataattatatattcaaaccatc 427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859  atatttaataatattatttttatttttttacacaaatcataattatatattcaaaccatc 800

                                                                        
Query: 428  atgttatatatgggaatttggtcaaggatataaatagtgtcattatctggtattatgtat 487
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799  atgttatatatgggaatttggtcaaggatataaatagtgtcattatctggtattatgtat 740

                                                                        
Query: 488  actaaagtacaaattggatggagaatatttagatcagctacataaaaggcacatgtatca 547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739  actaaagtacaaattggatggagaatatttagatcagctacataaaaggcacatgtatca 680

                                                                        
Query: 548  gataccagacaaaaggatttttttttagaaaaccagatacacatttttgtaacagttcta 607
            |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 679  gataccagacaaaagga--tttttttagaaaaccagatacacatttttgtaacagttcta 622

                                              
Query: 608  cagtctgtaaatataagaagaatggtgatttcca 641
            ||||||||||||||||||||||||||||||||||
Sbjct: 621  cagtctgtaaatataagaagaatggtgatttcca 588


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1039
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1029
Effective search space:   649299
Effective search space used:   649299
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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