BAC Information

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BAC

Clone NameMSMg01-141P07
Chromosome4 (Build37)
Map Location 37,060,474 - 37,061,090
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042132
Downstream geneLOC545600, LOC621458, LOC277771
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141P07.T7 (MSMg01no141_p07.b1)MSMg01-141P07.TJ (MSMg01no141_p07.g1)
ACCAG346693AG346694
length1,2061,197
length of high quality
(start - end)		582 (44 - 625)619 (89 - 707)
definitionCHROMAT_FILE: MSMg01no141_p07.b1 PHD_FILE: MSMg01no141_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:58 2005CHROMAT_FILE: MSMg01no141_p07.g1 PHD_FILE: MSMg01no141_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTATCTTNNNNNATCAGTGGGCGCTAAGACTCCANAGGGAGAGGATC
CGCGGAATTCTTCTTAAAGGGGGAGCCATTTATCTATGAAAGGAGAATTT
TTTCTTGTTAAATATATCTTTATTATAATTCTCCTTCCTCTACTCTTCCC
AGTTTCTTTTATCTCTACCTGGTCTCCCAGCCAGATTCACTTCTTTTCTG
TCTTTCAAAAAACAACAAAAAACAAAAAAACAAAAATAAAAACAAAAACA
AAACATGCTTCTACTAGATAATAATAAGATAAAAATAAAAATTACATCAT
CGTAGTACTTGAGAAACAAACAGAAGAAAAATACTCAAGAGAAAGCTTAA
AAAATCACTTGTATGCTCACTCAGGAATCCCAAAAAACACTAACCTGGAA
GCCATAATACAAATCAATTTTTTTTACATTTCTTTCTTTTATTGAAACAG
ATATTTTCGCTTACTACATTGTGATTTTAGTTTTCAAGTCCCCTATTCCT
CACAGTTTCTCTCCACATCCCCTTCTCTCCAGATCCACTCCTTTACTATC
TCTCTCTCTCTCATATATATATATATATATATATATATATATATATATAT
ATATATATATATATATATATATAAAGAAATATATATATATGTCACTAAGA
GANAATAATAAAGTATAACCGAGAAAGATATAGTAAGATGAAGNCAAAAC
TGTCACATCAGACTTGGATAAGACAAGCAAGAAAAGTAAAAGATCCAAAG
AGAAGTCACAAGAACTAGATGCCCACTTGTTCACTCACTCAGAAATCCCA
TCCAATTGGAAGCTACTCATGAGGCAGAAGAAGTTCACAGAAACTCACTC
CTGGAGTCTGGCATTCTCTCTAACCCATTACATTAATTTTTCATTCCCGC
GTTAATCCACTGTATGAATCCACATGCTCTCTTTTAAAATTATCCAATAA
TAGTGCTTTTTAAAATGAATTCTGAAATACTAAAGCCTTTGCCCAGGTCC
CAAAGCCCTAAAACTTCCTTGAACAAACCCTGAAATTGAAATTCCTAAAA
AAGTTGTAATCAGTAGATTTAAAAAAACTTTGGGTTAACCCATCTTTTTT
AAAAAACCTAATTTTCTCCCCTCCCGGCAATTACCCTCCCCCAGAAAAGA
AGTTTTTATTGTAGGTGACCTCATAAAATTTTAAAATATTTTGTTATCTC
CCTCCC

NCCCATTTTTNNNNNTTAGCATGGAGGCGGCXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTGACCCATGGCTATTAGG
GATTATTGTAGACTCTCAACCCAGTAAGTTTTCTCTGAGCTGGTCTCCAT
GACATCTGTTCAGCTTAATGTCCCAAACGCTCATCACAACTCCTTAGATT
TTTCCAAATAGAAGACTATTTCAGAGCTTAATTCCTGGCCCAGGACACTT
AAGAAAGAATATGTGAATTATCTAGAAATTTGGTTGAAAAGTGCCATTTT
TGAAGAATAAGGAAAGATGCAGATAAATTCAACATATTTTGATTTCCTTT
ACATATGTTGTTATTTTTTAATTCTAAATTATTTTATTATAATTATTTCA
TTCACATATGTTTACTGTATTAAATATATTTAAAAATTGTTTAGTCTCTT
AATTCAAATTCATTAACAAGTTTAGTGTCATTTAACTGTTTAACTGGCAT
TGTAAGCTGCTTAGAAAAAGGATGCAATGTGATTTTAATAAATACATACC
AAAAGCCCATAATATACATATATTGATAAACATTATTTTAAGATATAATT
TAATATTTGATGTAATTGTTTGACAATGTATTTTTACATTTAAAATTGTA
TTTTAATTTTATTTAGGAGTCTATGATTGTGTGTGTGTGTGTGTGTGTGT
GTGTGNNATNNNNNNNNNNNNNNNNNNNNNNNNTTNNNNNNTNTTNTTTN
NNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
NNTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTNTTTTTTTTTTTTTTTT
TTTTTTTNTTTTTTTTTTTTTTTTTNTTTTNTTTTTTTTTTTNTTTTTTT
TTTTTTTTTTTTTTTTTTTTNNTTTTTTTNTTTTTTTTTTTTTTTTTNNT
TTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTNTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_p07.g1 MSMg01no141_p07.g1 CHROMAT_FILE:
MSMg01no141_p07.g1 PHD_FILE: MSMg01no141_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:59 2005
         (619 letters)



>mm_chr4_37060274_37061292
          Length = 1019

 Score = 1154 bits (597), Expect = 0.0
 Identities = 612/617 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggctattagggattattgtagactctcaacccagtaagttttctctgagctggtctcc 60
           ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |
Sbjct: 201 atggctattagggattattgtagactctcaacagagtaagttttctctgagctggtcttc 260

                                                                       
Query: 61  atgacatctgttcagcttaatgtcccaaacgctcatcacaactccttagatttttccaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgacatctgttcagcttaatgtcccaaacgctcatcacaactccttagatttttccaaa 320

                                                                       
Query: 121 tagaagactatttcagagcttaattcctggcccaggacacttaagaaagaatatgtgaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagaagactatttcagagcttaattcctggcccaggacacttaagaaagaatatgtgaat 380

                                                                       
Query: 181 tatctagaaatttggttgaaaagtgccatttttgaagaataaggaaagatgcagataaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatctagaaatttggttgaaaagtgccatttttgaagaataaggaaagatgcagataaat 440

                                                                       
Query: 241 tcaacatattttgatttcctttacatatgttgttattttttaattctaaattattttatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaacatattttgatttcctttacatatgttgttattttttaattctaaattattttatt 500

                                                                       
Query: 301 ataattatttcattcacatatgtttactgtattaaatatatttaaaaattgtttagtctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataattatttcattcacatatgtttactgtattaaatatatttaaaaattgtttagtctc 560

                                                                       
Query: 361 ttaattcaaattcattaacaagtttagtgtcatttaactgtttaactggcattgtaagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaattcaaattcattaacaagtttagtgtcatttaactgtttaactggcattgtaagct 620

                                                                       
Query: 421 gcttagaaaaaggatgcaatgtgattttaataaatacataccaaaagcccataatataca 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 gcttagaaaaaggatgcaatgtgattttaataaatacataccaaaagtccataatataca 680

                                                                       
Query: 481 tatattgataaacattattttaagatataatttaatatttgatgtaattgtttgacaatg 540
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 tatattgataaacattattttaagatataatttaatatttaatgtaattgtttgacaatg 740

                                                                       
Query: 541 tatttttacatttaaaattgtattttaattttatttaggagtctatgattgtgtgtgtgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatttttacatttaaaattgtattttaattttatttaggagtctatgattgtgtgtgtgt 800

                            
Query: 601 gtgtgtgtgtgtgtgtg 617
           |||||||||||||||||
Sbjct: 801 gtgtgtgtgtgtgtgtg 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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