This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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BAC name
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Search Result
BAC
Clone Name
MSMg01-142G13
Chromosome
4 (Build37)
Map Location
18,255,107 - 18,255,775
singlet/doublet
singlet
Overlap gene
none
Upstream gene
Mmp16
Downstream gene
LOC667251
,
LOC435772
,
Cngb3
,
LOC623122
Link
Open Mouse BAC browser
Click to get alignment info.
name
Mmp16
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:17389
MGI:1276107
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC667251
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:667251
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 mRNAs, 113 ESTs, 6 Proteins
pseudo
: _no_value
name
LOC435772
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:435772
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein
name
Cngb3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:30952
MGI:1353562
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC623122
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:623122
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 78 ESTs, 9 Proteins
pseudo
: _no_value
name
Mmp16
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:40254543
GeneID:17389
MGI:1276107
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: matrix metallopeptidase 16
transcript_id
: NM_019724.2
name
LOC435772
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:94371475
GeneID:435772
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein
product
: similar to cyclic nucleotide binding domain containing 1
transcript_id
: XM_487784.3
name
Cngb3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118130962
GeneID:30952
MGI:1353562
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: cyclic nucleotide gated channel beta 3
transcript_id
: NM_013927.2
name
Mmp16
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:40254544
CCDS:CCDS17989.1
GeneID:17389
MGI:1276107
definition
GO_component
: GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005509 - calcium ion binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0030574 - collagen catabolism [Evidence IEA]; GO:0000270 - peptidoglycan metabolism [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
codon_start
: 1
note
: membrane-type-3 matrix metalloproteinase; Membrane type 3-MMP
product
: matrix metalloproteinase 16
protein_id
: NP_062698.2
name
LOC435772
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:94371476
GeneID:435772
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_487784.3
name
Cngb3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:8393164
CCDS:CCDS17990.1
GeneID:30952
MGI:1353562
definition
GO_component
: GO:0001750 - photoreceptor outer segment [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IC]
GO_function
: GO:0030553 - cGMP binding [Evidence IC]; GO:0005223 - intracellular cGMP activated cation channel activity [Evidence IPI]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]
GO_process
: GO:0009187 - cyclic nucleotide metabolism [Evidence IC]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0006810 - transport [Evidence IEA]; GO:0007601 - visual perception [Evidence IEA]
codon_start
: 1
note
: cyclic nucleotide gated channel beta 6
product
: cyclic nucleotide gated channel beta 3
protein_id
: NP_038955.1
name
LOC667251
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149252106
GeneID:667251
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 mRNAs, 113 ESTs, 6 Proteins
product
: similar to NADPH cytochrome B5 oxidoreductase
pseudo
: _no_value
transcript_id
: XR_001999.2
name
LOC623122
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149252107
GeneID:623122
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 78 ESTs, 9 Proteins
product
: similar to protein phosphatase 2A inhibitor-2 I-2PP2A
pseudo
: _no_value
transcript_id
: XR_031839.1
clone name
MSMg01-331O24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-503K09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-169D14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-218O14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-328I06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-176C23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-263L19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-468G15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-301K22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-155C06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-050L12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-437J03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-346H05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-515J02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-396G18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-338P01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-233J17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-233K18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-473O08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-266A08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-532I17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-416D06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-413E13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-193E11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-193A05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-111O18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-336E06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-396M24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-069A16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-541M06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-176F07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-529H03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-335A21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-273B02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-280J13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-109B02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-449A05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-181C09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-150G05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-516C09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-518C15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-503F17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-197O04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-113F05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-325C03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-490N17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-158C19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-170L02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-417I05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-296P18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-355F18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-236G05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-502D18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-066I22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-133O03
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-438A10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-400G17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-142G13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-128L09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-483K20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-052N02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-417K17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-509B09
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-429J24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-395A03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-080K04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-083G17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-522K10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-452G10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-120M12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-393H12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-171N09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-108O15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-270D17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-270D16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-102K19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-450E20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-540F19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-111N20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-358P13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-326A01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-459D08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-476N02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-531O02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-422A07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-302B12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-073A18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-510G11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-540C17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-145I16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-145J17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-105F24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-441E06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-491J09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-162K11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-455G05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-440M07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-440A09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-130P01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-332P11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-192K19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-049C03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-225B15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-317N12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-296J06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-272M16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-008M16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-124N22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-003F03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-246P08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-262O09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-312G11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-148I07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-260C01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-149G07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-303F10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-277M22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-070P24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-344F18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-151H17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-140H17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-264B09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-273O09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-232L06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-104I14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-275M20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-114B13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-168G20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-008L06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-158L13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-272D04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-050L01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-008K03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-116G09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-052K14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-309I21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-193O11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-100C15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-106K05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-239H08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-327F11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-088J20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-007M20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-080A01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-308E02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-120B20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-155P02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-050I15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-065C18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-161F18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-052L02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-237G13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-159K10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-056A03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-330K22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-235E21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-102H21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-013I04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-036H22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-164D21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-178O06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-001N03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-285K12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-064P01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-159C10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-031K07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-120C02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-004K24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-127L03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-292O17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-136E13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-306D05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-293O01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-069G10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-005P02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-015H01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-096N02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-281H06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-201M02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-100I05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-112K20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-250M07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-238O18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-292G15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-099H22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-290O23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-225A05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-173M07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-048C11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-048O02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-049C08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-244I20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-321I01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-042A24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-113E02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-273B15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-259A19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-101O21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-015G08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-106K21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-267J01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-027F10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-120M03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-052J15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-063M04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-148N13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-227P21
singlet/doublet
doublet
plural/unique
unique
