| Query= MSMg01no142_g13.g1 MSMg01no142_g13.g1 CHROMAT_FILE:
MSMg01no142_g13.g1 PHD_FILE: MSMg01no142_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:03 2005
(763 letters)
>mm_chr4_18255050_18256212
Length = 1163
Score = 1162 bits (601), Expect = 0.0
Identities = 651/675 (96%), Gaps = 16/675 (2%)
Strand = Plus / Minus
Query: 99 acaaggctgtatttcttactttttattctgttttgttttcatacaataataattttatac 158
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 acaag--tgtatttcttactttttattctgttttgttttcatacaataataattttatac 669
Query: 159 atgaaaagtattaaataagatattttactttacttaaggctaaaatcatgcatttacttt 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 atgaaaagtattaaataagatattttactttacttaaggctaaaatcatgcatttacttt 609
Query: 219 ggacttcctagtttcatcctaggagaaaccttaattgaggttggttgtgataattttcat 278
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 608 ggacttcttagtttcatcctaggagaaaccttaattgaggttggttgtgattatttccat 549
Query: 279 ttcttataaaagaaagtatcactgagggaaaaaatgttctgaaaatctcagtttaaagaa 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttcttataaaagaaagtatcactgagggaaaaaatgttctgaaaatctcagtttaaagaa 489
Query: 339 cagtatagaagaagaggctgctaacacattgttttagcatgaacctgctacatgccctat 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cagtatagaagaagaggctgctaacacattgttttagcatgaacctgctacatgccctat 429
Query: 399 aataatgaaggcttaatgtgaacttgaattctaaggaattctaataaaagatttatagat 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aataatgaaggcttaatgtgaacttgaattctaaggaattctaataaaagatttatagat 369
Query: 459 aattcgggactgtttacatggatttgatatctaagtccacaatgattgat--atatatat 516
||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 368 aattcggaactgtttacatggatttgatatctaagtccacaatgat--atacatatatat 311
Query: 517 atatatatatatatatatat--------acatatatatatatatatattcatttcattaa 568
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Sbjct: 310 atatatatatatatatatatgtatatatatatatatatatatatatattcatttcattaa 251
Query: 569 aaggtgggagacagggacaagtagtccatgcaagctcacactagagactctttttatgtc 628
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 250 aaggtgggaaacagggacaagtagtccatgcaagctcacactagagact--ttttatgtc 193
Query: 629 tacttagccagagatgacactgggttgtccaatgagaaatgtagtttctattctgagagt 688
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 192 tacttagccagagatgacactgggttgtccagtgagaaatgtagtttctattctgagagt 133
Query: 689 ctatatactcagctgaaaatcaagtgatctgtctgaaaggaagcaaacaaacaacaagta 748
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ctatatactcagctgaaaagcaagtgatctgtctgaaaggaagcaaacaaacaacaagta 73
Query: 749 atcaatcaatcaatc 763
|||||||||||||||
Sbjct: 72 atcaatcaatcaatc 58
Score = 89.7 bits (46), Expect = 9e-22
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 511 atatatatatatatatatatatatatacatatatatatatatatat 556
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atatatatatatatatatatatatatacatatatatatatatatat 308
Score = 54.9 bits (28), Expect = 3e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 507 atatatatatatatatatatatatatat 534
||||||||||||||||||||||||||||
Sbjct: 291 atatatatatatatatatatatatatat 318
Score = 54.9 bits (28), Expect = 3e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 509 atatatatatatatatatatatatatat 536
||||||||||||||||||||||||||||
Sbjct: 291 atatatatatatatatatatatatatat 318
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 99
Number of extensions: 8
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 4
Length of query: 763
Length of database: 1163
Length adjustment: 10
Effective length of query: 753
Effective length of database: 1153
Effective search space: 868209
Effective search space used: 868209
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
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