Query= MSMg01no143_a12.b1 MSMg01no143_a12.b1 CHROMAT_FILE:
MSMg01no143_a12.b1 PHD_FILE: MSMg01no143_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:27 2005
(625 letters)
>mm_chr4_64773325_64774349
Length = 1025
Score = 1123 bits (581), Expect = 0.0
Identities = 611/621 (98%)
Strand = Plus / Minus
Query: 5 gaattccaggccagactcgatggtagaatgagaccttgtatcaaaacaaagcacaacatt 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 gaattccaggccagactagatggtagaatgagaccttgtatcaaaacaaagcacaacatt 766
Query: 65 accagataaatgtccctatttacattggtattgtttacatctgaaaaatgactataaaac 124
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 765 accagataaatgtccctatttacattggtattttttacatctgaaaaatgactataaaac 706
Query: 125 cttctatatttcccccagtatatgtcatattcctgggaaaattacacatgtatactgcag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 cttctatatttcccccagtatatgtcatattcctgggaaaattacacatgtatactgcag 646
Query: 185 ctttcaccccagccaggtagaatcttgaggtaattatgtactttttctgttgttattttt 244
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ctttcactccagccaggtagaatcttgaggtaattatgtactttttctgttgttattttt 586
Query: 245 cgagattaataaactccacgcaacacctcattgcccaagggaatgcaatctgacagctcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 cgagattaataaactccacgcaacacctcattgcccaagggaatgcaatctgacagctcc 526
Query: 305 aggtggcacctcatcaaagactgaatatgttccatgaatcttaatcctttcctgtgacag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aggtggcacctcatcaaagactgaatatgttccatgaatcttaatcctttcctgtgacag 466
Query: 365 tctgtggcgacacagcccaccactggacagaagattctgcagagaggaaagaaaatcccc 424
||||||| || | |||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 465 tctgtggtgagatagcccaccactggacagaagattccgcagagaggaaaggaaatcccc 406
Query: 425 cctcctgagttatgtcagagagaagtcagaatttgtagtccatatttagtctgtttttcc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cctcctgagttatgtcagagagaagtcagaatttgtagtccatatttagtctgtttttcc 346
Query: 485 ccagaggaccatgaatgggactattgctttattaataaatgttttgttcatgatgcaata 544
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ccagaggaccatgaataggactattgctttattaataaatgttttgttcatgatgcaata 286
Query: 545 tccaatagctgtgttttctttgtccccagatggtacaggaaaatgaaaaatctcacctct 604
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 285 tccaatagctgtgttttctttgtccccagatggtacaggaaaatgaaaactctcacctct 226
Query: 605 cttgcttattcttcatatttc 625
|||||||||||||||||||||
Sbjct: 225 cttgcttattcttcatatttc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_a12.g1 MSMg01no143_a12.g1 CHROMAT_FILE:
MSMg01no143_a12.g1 PHD_FILE: MSMg01no143_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:27 2005
(394 letters)
>mm_chr4_64659023_64659816
Length = 794
Score = 704 bits (364), Expect = 0.0
Identities = 386/400 (96%), Gaps = 12/400 (3%)
Strand = Plus / Plus
Query: 1 attacaaactagggaatacaatgagacaaaccaatgttcattatgccacttgctatctta 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 attacaaactagggaatacaatgagacaaaccaatgttcactatgccacttgctatctta 260
Query: 61 cgtatggaggtcaagagcgcagaaacactaacatattgagggtagatgttgaggctggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtatggaggtcaagagcgcagaaacactaacatattgagggtagatgttgaggctggac 320
Query: 121 agatgcctaatggcagatgtctttgtattaagtaattccactcactggtgccaacacaaa 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 agatgcctaatggcagatgtctttgtattaagtaattctactcactggtgccaacacaaa 380
Query: 181 tgaacaaccaggaaagtttacttatgaccagcatagtatgtgaattagagtgtaccattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaacaaccaggaaagtttacttatgaccagcatagtatgtgaattagagtgtaccattt 440
Query: 241 tggaaagaagttgtctctcatagtctttcttgtgatagctacagtgttcaagcactctta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaaagaagttgtctctcatagtctttcttgtgatagctacagtgttcaagcactctta 500
Query: 301 ttaaagtaggatgatggctagatttcagaagatcctcgaaacccccc------aaggaat 354
||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 ttaaagtaggatgatggctagatttcagaagatcctcgaaa------ttggataaggaat 554
Query: 355 atcaattcctaatcgaaattggattaggaatctaaaatta 394
||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 atcaattcctaatcgaaattggattaggaatctaaaatta 594
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space: 302225
Effective search space used: 302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
