BAC Information

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BAC

Clone NameMSMg01-143C02
Chromosome4 (Build37)
Map Location 140,883,338 - 140,883,660
singlet/doubletsinglet
Overlap geneEpha2
Upstream geneLOC100040728, Arhgef10l, Rcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19
Downstream geneGm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1, Tmem51, 9030409G11Rik, EG665983
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143C02.T7 (MSMg01no143_c02.b1)MSMg01-143C02.TJ (MSMg01no143_c02.g1)
ACCAG347561AG347562
length602670
length of high quality
(start - end)
---323 (76 - 398)
definitionCHROMAT_FILE: MSMg01no143_c02.b1 PHD_FILE: MSMg01no143_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:36 2005CHROMAT_FILE: MSMg01no143_c02.g1 PHD_FILE: MSMg01no143_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCCCCCCNCCCGCACCCAAACTTCCCTCTAATAATTTGCCGGCCG
CCTAATACTGACTCACTTATTTCCAAAGAGAAAGTCCGNCGGAAATTCAA
GGAAGCTTCCCCCCCTCCGCCCTGCGTCGCCATGTCAACATTTCTGCGCA
TGCGCTTCGTGGTCAGCGTCTTGACCTGACGGAAGCAGGCTCTGCCTGCC
AGGACAGAAACGAAGGGGCGCGCTTTTATAAAATCTTCCCCCCCTTGGTT
GGTTCTTCCACGGGTTAAAGAGGGGGGGCCCCTGGCAACCCTGAATTTGA
AGAAGGCCCAATCGCCAAAAAGGGGGTTTTTTAAAAAGAAAAAACCGCGC
TCGGCGCCCATTTGTGGAACAACCCTCCCCCACAAACAAACATACTGCTC
TTGTTTTTCCCCCCTGTTTCCACCTCCACCAGTACATTCGTGCGTTCTAA
TACTAACATTTTCCCCCTCACCCATCTACGATAACCGGAAAACATAACCT
ACCTTTACACCTACACAAGCAGTATTTTCCCTCCCAATATTTATCTCCAC
GCCAGAAAAAAAACCACCCCACACAATTACCATTCACAAAAAAATAATCT
TT
NCCCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTGCTCAGGAATACATCACTCAAG
CCTCTTCATGTCTTTGTAAAAAGGAGCAGACACAGAGGCATGACCAGGCT
TTGAAAGGAACCACTCTGATGGAAGAGGGCCTCAAGGTGGGGCACTGGCT
AAGCCTGACAGTGGTGTTTCTATACATACTCAGCCGTACAGGGTGGAATT
AGGCCCAGTGAGTCTGGGGTTACCCAACACCCTGCCTTTTCTGGCTTCTC
GGTGCTTCTCCAGGCCCCCATAGGGTCTTGCAAAATCCCAGCCCCCTTAG
TGGTAGGCTTGGAGGTTCTCCCCATATCTATCTTCCAGCCTTCTTGCTGC
AGCACGAGCAGTGTCTCCCCCCCTCCGTCCCTCCCTCCCCAACTGGGTCT
GTCTATTCCTGCTCAATGCTCGGCTCTTTCCAAGCTTGCGGAAAAAGTCT
TGTCTTCAGCATTGCGAACTCCTGGAGCTCGTCCCATATAATTACCTCCC
CCCATCGTCAAGAGCTGGCCCGTAAAAACCTGCCTGTTTTCTTGATCTAA
CCTCTGTTGCATGTATACACTGTACACAGAAACACACCTGACCCTTAGAA
TAGACCTTCTGCTTACCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_c02.g1 MSMg01no143_c02.g1 CHROMAT_FILE:
MSMg01no143_c02.g1 PHD_FILE: MSMg01no143_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:36 2005
         (323 letters)



>mm_chr4_140883138_140883860
          Length = 723

 Score =  617 bits (319), Expect = 0.0
 Identities = 322/323 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgctcaggaatacatcactcaagcctcttcatgtctttgtaaaaaggagcagacacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 actgctcaggaatacatcactcaagcctcttcatgtctttgtaaaaaggagcagacacag 464

                                                                       
Query: 61  aggcatgaccaggctttgaaaggaaccactctgatggaagagggcctcaaggtggggcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aggcatgaccaggctttgaaaggaaccactctgatggaagagggcctcaaggtggggcac 404

                                                                       
Query: 121 tggctaagcctgacagtggtgtttctatacatactcagccgtacagggtggaattaggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tggctaagcctgacagtggtgtttctatacatactcagccgtacagggtggaattaggcc 344

                                                                       
Query: 181 cagtgagtctggggttacccaacaccctgccttttctggcttctcggtgcttctccaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cagtgagtctggggttacccaacaccctgccttttctggcttctcggtgcttctccaggc 284

                                                                       
Query: 241 ccccatagggtcttgcaaaatcccagcccccttagtggtaggcttggaggttctccccat 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ccccacagggtcttgcaaaatcccagcccccttagtggtaggcttggaggttctccccat 224

                                  
Query: 301 atctatcttccagccttcttgct 323
           |||||||||||||||||||||||
Sbjct: 223 atctatcttccagccttcttgct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)