Query= MSMg01no143_d13.b1 MSMg01no143_d13.b1 CHROMAT_FILE:
MSMg01no143_d13.b1 PHD_FILE: MSMg01no143_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:43 2005
(640 letters)
>mm_chr4_131537233_131538272
Length = 1040
Score = 1118 bits (578), Expect = 0.0
Identities = 628/648 (96%), Gaps = 8/648 (1%)
Strand = Plus / Plus
Query: 1 acaaaaaaaacc-atatcaattcaagctgggcatgatggcacaggcctataaacctagca 59
|||| ||||| | ||||||||||||| ||||||||||||||||||||| ||||||||| |
Sbjct: 196 acaacaaaaaactatatcaattcaagttgggcatgatggcacaggcctgtaaacctagta 255
Query: 60 cctgggaggcggatgatagcaagttataggcaggacagggctacatagtaaggctctgtc 119
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 256 cctgggaggcggatgatagcaagttataggtaggacagggctacatagtaaggctctgtc 315
Query: 120 tgaaaacataaacaaacaaacaaa----ttcaactctcttttttctctctttgtagccta 175
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 316 tgaaaacataaacaaacaaacaaacaaattcaactctcttttttctctctttgtagccta 375
Query: 176 ggcttgccttaaacaatccgctcgcctccagagaactggcattacaggtgtaatctgcca 235
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 376 ggcttgccttaaacaatccgctcgcctccagagaactggtattacaggtgtaatctgcca 435
Query: 236 cacccagctccctcactgttcttctcccatagtcctttgcttcttccctttctttctcct 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cacccagctccctcactgttcttctcccatagtcctttgcttcttccctttctttctcct 495
Query: 296 ctctttttttccctttgcccccatggagggagtcttgctatgtaccccaccctagcttta 355
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 496 ctctttttttccctttgcccccatggagggagtcttgctatgtagcccaggctagcttta 555
Query: 356 ggtttttagatttatgtctatgggtgttttggctgatgtatgtctgtgtaccacatgctt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ggtttttagatttatgtctatgggtgttttggctgatgtatgtctgtgtaccacatgctt 615
Query: 416 gcagtacccaggaaagccagaag---gcacctgatctcctggaactagagctactgatgg 472
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 616 gcagtacccaggaaagccagaagaaggcacctgatctcctggaactagagctactgatgg 675
Query: 473 tgtgaaaatcaagcccaaggcgtcctctagaagagcagctgatgcagttaaccactgaac 532
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 676 tgtgaaaatcaagcccaaggtgtcctctagaagagcagctgatgtagttaaccactgaac 735
Query: 533 atctctataaaccccagactacctctgaacccaagacctgcctcccttttgtcatctagt 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 atctctataaaccccagactacctctgaacccaagacctgcctcccttttgtcatctagt 795
Query: 593 gctgagattctaggcatgttatgccaggccaaaaattgtttctcagga 640
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gctgagattctaggcatgttatgccaggccaaaaattgtttctcagga 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_d13.g1 MSMg01no143_d13.g1 CHROMAT_FILE:
MSMg01no143_d13.g1 PHD_FILE: MSMg01no143_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:43 2005
(339 letters)
>mm_chr4_131683331_131684069
Length = 739
Score = 600 bits (310), Expect = e-176
Identities = 331/338 (97%)
Strand = Plus / Minus
Query: 1 actcctaaaagctgtccttggccccccacatgcacggtatggcaggcatcacccccaccc 60
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 538 actcctaaaagctgtccttggccctccacatgcacggtatggcaggtatcacccccaccc 479
Query: 61 caaataaataaacattaacaagaataccaggatgctggagagagagctcaatggtagagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 caaataaataaacattaacaagaataccaggatgctggagagagagctcaatggtagagg 419
Query: 121 caacgtcctgggttcaatcccaaggtcacaaagaaacgaaacctttaatagggatagaac 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 caacatcctgggttcaatcccaaggtcacaaagaaacgaaacctttaatagggatagaac 359
Query: 181 ttggacaggagatgtagctcagtgcttttctgccggtgtacccaaggccctagtctcaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttggacaggagatgtagctcagtgcttttctgccggtgtacccaaggccctagtctcaat 299
Query: 241 atcagtgtttggggggaggggcttaggacacaccctaacctagcatggtcattggttccc 300
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 298 atcagtgtttgaggggaggggcttaggacataccctaacctagcatggtcattggttccc 239
Query: 301 cctacgggcacattgccaggtctcacgggttgaccctg 338
| || |||||||||||||||||||||||||||||||||
Sbjct: 238 cataagggcacattgccaggtctcacgggttgaccctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space: 240900
Effective search space used: 240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
