Query= MSMg01no143_d24.b1 MSMg01no143_d24.b1 CHROMAT_FILE:
MSMg01no143_d24.b1 PHD_FILE: MSMg01no143_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:45 2005
(571 letters)
>mm_chr4_142776324_142777294
Length = 971
Score = 1044 bits (540), Expect = 0.0
Identities = 561/568 (98%)
Strand = Plus / Minus
Query: 4 ggaattcctttctgctttcatgacgttatttcatggattcctctgtctctgccatggctc 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 ggaattcctttctgctttgatgacgttatttcatggattcctctgtctctgccatggctc 712
Query: 64 ctaatacaaggacctatttctccctttgtctgcttcactctgggataatggcatcttgag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ctaatacaaggacctatttctccctttgtctgcttcactctgggataatggcatcttgag 652
Query: 124 ttctctacttcccatgaactctttctgcacttccaggaatccacgtactcttcatctatc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ttctctacttcccatgaactctttctgcacttccaggaatccacgtactcttcatctatc 592
Query: 184 cctttgtgtctcagacctcttggcagttgaagctggacctttgctcatttgttcatagcc 243
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 cctttgtgtctcagaccttttggcagttgaagctggacctttgctcatttgttcatagcc 532
Query: 244 ctcccttttctgtgtctcctagcctggggaagacaccggacagaggagtacatgccttaa 303
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 531 ctcccttttctgtgtctcctagcctggggaagacaccagacagaggagtacatgccttaa 472
Query: 304 acctgctcttgattgacacaccggccagtaagggctcactaaattccagccccaggagtc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 acctgctcttgattgacacaccggccagtaagggctcactaaattccagccccaggagtc 412
Query: 364 ttgtaggcaccaaagtggagacagacttgaggcctggctgatcctggggaagcgtagagg 423
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ttgtagggaggaaagtggagacagacttgaggcctggctgatcctggggaagcgtagagg 352
Query: 424 ctgcagtacaaatacaaatcggcacctttaggtgctggttctggtgtgaggtatggcttc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ctgcagtacaaatacaaatcggcacctttaggtgctggttctggtgtgaggtatggcttc 292
Query: 484 cttcctgggcctgacagcggtgaaggggacctcttttgtgttgttttctcgtctctcctg 543
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cttcctgggcctgacagcggggaaggggacctcttttgtgttgttttctcgtctctcctg 232
Query: 544 ggcctgactgcagccctgatgaaagatc 571
||||||||||||||||||||||||||||
Sbjct: 231 ggcctgactgcagccctgatgaaagatc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_d24.g1 MSMg01no143_d24.g1 CHROMAT_FILE:
MSMg01no143_d24.g1 PHD_FILE: MSMg01no143_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:45 2005
(443 letters)
>mm_chr4_142622115_142622957
Length = 843
Score = 775 bits (401), Expect = 0.0
Identities = 431/443 (97%), Gaps = 4/443 (0%)
Strand = Plus / Plus
Query: 1 aaccaatcagagagcctgtttcagaaaacaaggggagcagctcctgagaaacgactgctg 60
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 205 aaccaatcagagagcctgtttcagaaagcaaaaggagcagctcctgagaaacgactgctg 264
Query: 61 agcttgacctctggcctctacatgcacacagacacacacacaagcacatgcatacatgca 120
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 265 agcttgacctctggcctctacatgcacacagacacacatacaatcacatgcatacatgca 324
Query: 121 tgcatacatacatgcatatatacatctatactcacacagacaagtgcatgtgtacacaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgcatacatacatgcatatatacatctatactcacacagacaagtgcatgtgtacacaca 384
Query: 181 catgtatatacctatacacagacaagtgcacatgcatacaatgtgcacacacacatgcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catgtatatacctatacacagacaagtgcacatgcatacaatgtgcacacacacatgcat 444
Query: 241 atacatacatacatacatacatacatacatacatacatacatacatacatacatacaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 445 atacatacatacatacatacatacatacatacatacatacatacatacataca----aac 500
Query: 301 acaagcacatatacacatgatgagaaacactgacgagtttgtaagtttgtgggtgaggtt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 acaagcacatatacacatgatgagaaacactgacgagtttgtaagtttgtgggtgaggct 560
Query: 361 gttttgttttggttctgtagctcaatcacaggattttgagtgtggctttgtggatgacag 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 gttttgttttggttctgtagctcaatcacaggattttaagtgtggctttgtggatgacag 620
Query: 421 catggtattgtagtaccaaaagg 443
||||||||||||||| |||||||
Sbjct: 621 catggtattgtagtatcaaaagg 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
