Query= MSMg01no143_h22.b1 MSMg01no143_h22.b1 CHROMAT_FILE:
MSMg01no143_h22.b1 PHD_FILE: MSMg01no143_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:04 2005
(367 letters)
>mm_chr4_97252623_97253393
Length = 771
Score = 661 bits (342), Expect = 0.0
Identities = 360/366 (98%), Gaps = 4/366 (1%)
Strand = Plus / Plus
Query: 6 gaattcatgttgtga-ccccatttcccatttc-actttt-aatgattgtcaactgagcaa 62
||||||||||||||| || ||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 206 gaattcatgttgtgagccacatttcccatttcaacttttaaatgattgtcaactgagcaa 265
Query: 63 cttttcc-aatgactgttttctgcgtgcctttgaagatactgcctagtgaagatttttct 121
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 266 cttttccaaatgactgttttctgcgtgcctttgaaggtactgcctagtgaagatttttct 325
Query: 122 aggaattggcactagcctttcaacataatgactgaaatattggaaattgcttaaatggta 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aggaattggcactagcctttcaacataatgactgaaatattggaaattgcttaaatggta 385
Query: 182 ataaatgaaaagattcaaaaacgaagagaaccaggaaataataaagtgtaaggtagtctc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ataaatgaaaagattcaaaaacgaagagaaccaggaaataataaagtgtaaggtagtctc 445
Query: 242 agtaactgggctaattttagaaagtccatggaatacctatgtatagaccttgaatttaat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agtaactgggctaattttagaaagtccatggaatacctatgtatagaccttgaatttaat 505
Query: 302 gcatttttatgctcttctaaaatatctttatacagcaaactggcctgatctgagctaatt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gcatttttatgctcttctaaaatatctttatacagcaaactggcctgatctgagctaatt 565
Query: 362 attaaa 367
||||||
Sbjct: 566 attaaa 571
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 771
Length adjustment: 9
Effective length of query: 358
Effective length of database: 762
Effective search space: 272796
Effective search space used: 272796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_h22.g1 MSMg01no143_h22.g1 CHROMAT_FILE:
MSMg01no143_h22.g1 PHD_FILE: MSMg01no143_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:04 2005
(432 letters)
>mm_chr4_97405770_97406605
Length = 836
Score = 621 bits (321), Expect = 0.0
Identities = 339/347 (97%), Gaps = 4/347 (1%)
Strand = Plus / Minus
Query: 90 acatcaaacaaaatttaatatccatatgtgttattacaaatcctagcaaacttgctatgc 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 acatcaaacaaaatttaatatccatatgtgttattacaaatcctagcaaacttgctatgc 777
Query: 150 aaaggaagtaagctatagggggaaggcccatagcaatcgccatctagagtaacatgatat 209
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 776 aaaggaagtaagctatagggggaaggcccatcgcaaacgccatctagagtaacatgatat 717
Query: 210 aaacagatgagtgtgagaggaacacaggattgtctgctattactgcttctattcacgttg 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 aaacagatgagtgtgagaggaacacaggattgtctgctattactgcttctattcacgttg 657
Query: 270 cactgatgctagctaatgcactcaacttcaccaataccctgatacaagctagtgtggtaa 329
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 656 cactgatgctagctaatgcactcaacttcaccaataccctgatacaagctagtgtgttaa 597
Query: 330 ccctaactaactagtatcctcatcctg----gtgtgctgatcctggctgatgttctgacc 385
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 596 ccctaactaactagtatcctcatcctggttagtgtgctgatcctggctgatgttctgacc 537
Query: 386 gtaactagtgtgctgatcctgctcttgtactgatcttggctattgaa 432
||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gtaaccagtgtgctgatcctgctcttgtactgatcttggctattgaa 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 836
Length adjustment: 9
Effective length of query: 423
Effective length of database: 827
Effective search space: 349821
Effective search space used: 349821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
