CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNAAATCCGCGGAAT
TCATAGGAGTGTTCAATCAAGACAATATTTTTATTCAAGCTATTTTGATT
TTTAACAGGGGCATAATTACAAAGGCATATGGGGCACACTATGACATTAT
GACTAATATCCACATTGGATAGTAATCAAATCAAGGTATTTGGTATATCC
ATAATTTTGAATATTTTCATTTCCTTGTGACAGGAGAATTCAGAGTCAGC
CTTTCTAGTAATTTTGGCAGAGTCACTATAGAAATGTGAACTCCAATCAT
GCTGTGCCATGGAACAGTATTGCTCACTACTCCACATAGCTCCAGTTTGC
ACTTACTGAACAGTATCTCCTGTCATCCTCTCCATCTGCACTCCCTGTCC
TCTGGTAACCACCCCCCCCCACTGAACTTTGATGAGATCAACTTCTTTAG
ATTCCACCGCTGGGTAGGATTGTGTAGTACTTCTTCTTATGATGGACTTA
CTCCCTTAATGTGATGTCCTCCCAGTCAATCCGTGTTGCTGCAAATGACA
GGATATCGTGTAGATTGAGATATCTTATCCTATGCACATATCATAGTTTC
TTTTAATCATCTTTTGCTGAACAACAAACGCTGAATGCCTATTTTGTTTA
TTGATAACAATCATATTAAACACATGATTAGTA

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAGAGACCCAATCAGGAGCCCTTTCCA
GTTTGCTGGATACGAGAGGCACCGAGACCTACGTGAAGAAGTGAAGTGAC
AGACATGTGGATCTGGTTCAAGATGACTGCACTGGAAATGCAATCTGGGT
GGAGTTTGTTGCATCTTGAGCCTGTACATGCATGGAATTCTGAGGCACAA
GTATATTGGGAAGTATATAAAGAAACCACAGCAGGGCCTGGGGAGATGGC
TCAGTGGTTAACTACACTTGCTGCTCTTACAGAGAGAGAGACGATCCAGG
TTCAGTTTCTAGCACCCATATAACAGCTGTCAAACACCTGCAATGTCATT
TCTCGGAGATCAAAACCCCACCCGAACCTCCTTACATCCTTGCACATATG
TGGTGCACATAAAACACTCAACCACGTACACATAGACATAAAATAATAAA
ACATTTTATATATTAAAAAAACTAAACAGTACCATTTAATACTCAGTTTG
AGAAGGTGCCAACGAACTTGCCATAAGGAGTGCCTAACCAGCATAATCAT
GTCCCCTGCTTTTGCAATAAGCATTAGATGCACCTGACACAGTTTTCTAG
ATGTCCAATGAAATTCGTCTCAACTCTTTTTTGCCCA

Query= MSMg01no143_k16.g1 MSMg01no143_k16.g1 CHROMAT_FILE:
MSMg01no143_k16.g1 PHD_FILE: MSMg01no143_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:17 2005
         (343 letters)



>mm_chr4_103971981_103972720
          Length = 740

 Score =  569 bits (294), Expect = e-166
 Identities = 327/342 (95%), Gaps = 10/342 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagagacccaatcaggagccctttccagtttgctggatacgagaggcaccgagacctacg 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tagagacccaaccaggagccctttccagtttgctggatacgagaggcaccgagacctacg 348

                                                                       
Query: 61  tgaagaagtgaagtgacagacatgtggatctggttcaagatgactgcactggaaatgcaa 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 347 tgaagaagtgaagtgacagacatttggatctggttcaagatgactgcactggaaatgcaa 288

                                                                       
Query: 121 tctgggtggagtttgttgcatcttgagcctgtacatgcatggaattctgaggcacaagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tctgggtggagtttgttgcatcttgagcctgtacatgcatggaattctgaggcacaagta 228

                                                                       
Query: 181 tattgggaagtatataaagaaaccacagcagggcctggggagatggctcagtggttaact 240
           ||||||| ||  | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 tattggg-ag--tctaaagaaaccacagcagggcctggggagatggctcagtggttaact 171

                                                                       
Query: 241 acacttgctgctcttacagagagagagacgatccaggttcagtttctagcacccatataa 300
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 acacttgctgctcttac--agagagagacgatccaggttcagtttctagcacccatataa 113

                                                     
Query: 301 cagctgtcaaacacctgcaatgtcatttctcggagatcaaaa 342
           |||||||||||||||     ||||| |||| |||||||||||
Sbjct: 112 cagctgtcaaacacc-----tgtcagttctaggagatcaaaa 76


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 740
Length adjustment: 9
Effective length of query: 334
Effective length of database: 731
Effective search space:   244154
Effective search space used:   244154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)