BAC Information

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BAC

Clone NameMSMg01-143K23
Chromosome4 (Build37)
Map Location 36,107,224 - 36,263,431
singlet/doubletdoublet
Overlap genenone
Upstream gene3110043O21Rik, LOC620559, LOC621227, Lingo2
Downstream geneLOC100042132, LOC545600, LOC621458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143K23.T7 (MSMg01no143_k23.b1)MSMg01-143K23.TJ (MSMg01no143_k23.g1)
ACCAG347966AG347967
length688690
length of high quality
(start - end)		509 (70 - 578)446 (71 - 516)
definitionCHROMAT_FILE: MSMg01no143_k23.b1 PHD_FILE: MSMg01no143_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:18 2005CHROMAT_FILE: MSMg01no143_k23.g1 PHD_FILE: MSMg01no143_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,107,224 - 36,107,732)(36,262,986 - 36,263,431)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAATCCGCGGAAT
TCCTGAGTAGATTACCGGGAACTCGGTCAGCAAGAATCATCAGTTATTCC
ATTACTTCTTTTCCTACTATTAACATTTGTTGATGGAATGGATACATATA
AACACATTTTTAAGATCCTTATGAGCCATCTTGTTCCAATTCAATTTTTG
TCTGCATGTTTCTCATCATAGCTTGTAATTGTCTGTTTATATGTGGATGT
TCATTTAAGATCTAGCTCATTCACTGGGCTTGAGGCCCTGCAGTATTAAG
AATCACAATCATTTACTTTCATTTGTTTTGTCTGTATATTCATCAGCAAT
GCAAGACACTTTCTTGGCACACTGATAAGTGTATCAATTGGACTTGATAA
TTATTTTTAGTCGAGCGACAATAAATACCTGTATGAATCAGGTTTCTCAT
AAAGAATAGAACTAATAGTATGAACTAATGCATATTTATATTTAGTAAGG
GAAGTGCTAGCATGGCTTACATGCAGTTGTCTGAATAGTCCAGCAATGCT
GTGTCCTGACAGAAAGGTCAAGGATCCAGCAGTTGTTTAGTCCATCACAT
TAGTCTCAGGAGTACCAATCTGGTGCTAGATTCCTAGAGAGCTCCTATAG
TTCTTTGAGTTTTCAGCCCCCATTGGGATTCTAAAGAT

ATGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTGAGGTACAAAAATGAGAATCCCAAAGCT
TATCTCTGCTCTCGTGACTCACAATCTATTGGGTACATAAGTAAGAATCC
ATGGTTTTGTTTTTAAACAAATGCCTTAAAAAATTCTGAAGCACATTTAG
AAAAACAACTTTGTGTGTGGAGTTAATGACTGAAGAAGAAACGGGCTCAC
TGAATAAATTGTGATTAAAAACCTTAGTATGATGCTTAGGCACCATTGCC
TGTAGGATTCCTAGTTATTCTTAAGTAACATAATCTGCATTATTTCTAGT
TGGTGTTCATTTTCTTTTAACTGTTTGAGAATGGCCTTAGGTAAGGCACT
ATACCTACAGTAACCCACAACGGTCACTATGTGTTCACTTCACTCCTGCC
AGCCAGCTATCCTGTCACCTGGGAGCTTTCTTATGACCTTGACTTCACAC
CTGGTGAAGGAATAGGGCAGATGTAGACACTTCCACCCAGAAAAAAAACA
ACATTAACTTCCACAGGCAAAACAGCCCCCCTGCAAAATTCCCCCTCTGT
AGGCCAGTGTTCTGCTTAGTTTTGTAAATCTGACACAACTTACTGCCCCC
TGACAAAAAACGAACGTTAAACGATCCTCCGCCTCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_k23.b1 MSMg01no143_k23.b1 CHROMAT_FILE:
MSMg01no143_k23.b1 PHD_FILE: MSMg01no143_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:18 2005
         (509 letters)



>mm_chr4_36107024_36107932
          Length = 909

 Score =  953 bits (493), Expect = 0.0
 Identities = 505/509 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactcggtcagcaagaatcatcagttattccattacttcttttcctactattaacatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactcggtcagcaagaatcatcagttattccattacttcttttcctactattaacatttg 260

                                                                       
Query: 61  ttgatggaatggatacatataaacacatttttaagatccttatgagccatcttgttccaa 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgatggaatggatacatataaacgcatttttaagatccttatgagccatcttgttccaa 320

                                                                       
Query: 121 ttcaatttttgtctgcatgtttctcatcatagcttgtaattgtctgtttatatgtggatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaatttttgtctgcatgtttctcatcatagcttgtaattgtctgtttatatgtggatg 380

                                                                       
Query: 181 ttcatttaagatctagctcattcactgggcttgaggccctgcagtattaagaatcacaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcatttaagatctagctcattcactgggcttgaggccctgcagtattaagaatcacaat 440

                                                                       
Query: 241 catttactttcatttgttttgtctgtatattcatcagcaatgcaagacactttcttggca 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 catttactttcatttgttttgtctgtatattcatcagcaatgcaagacactttcttggta 500

                                                                       
Query: 301 cactgataagtgtatcaattggacttgataattatttttagtcgagcgacaataaatacc 360
           |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 501 cactgataagtgtatcaattggacttgataattatttttagtcgagtgataataaatacc 560

                                                                       
Query: 361 tgtatgaatcaggtttctcataaagaatagaactaatagtatgaactaatgcatatttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtatgaatcaggtttctcataaagaatagaactaatagtatgaactaatgcatatttat 620

                                                                       
Query: 421 atttagtaagggaagtgctagcatggcttacatgcagttgtctgaatagtccagcaatgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttagtaagggaagtgctagcatggcttacatgcagttgtctgaatagtccagcaatgc 680

                                        
Query: 481 tgtgtcctgacagaaaggtcaaggatcca 509
           |||||||||||||||||||||||||||||
Sbjct: 681 tgtgtcctgacagaaaggtcaaggatcca 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no143_k23.g1 MSMg01no143_k23.g1 CHROMAT_FILE:
MSMg01no143_k23.g1 PHD_FILE: MSMg01no143_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:18 2005
         (446 letters)



>mm_chr4_36262786_36263631
          Length = 846

 Score =  839 bits (434), Expect = 0.0
 Identities = 443/446 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaggtacaaaaatgagaatcccaaagcttatctctgctctcgtgactcacaatctatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ttgaggtacaaaaatgagaatcccaaagcttatctctgctctcgtgactcacaatctatt 587

                                                                       
Query: 61  gggtacataagtaagaatccatggttttgtttttaaacaaatgccttaaaaaattctgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gggtacataagtaagaatccatggttttgtttttaaacaaatgccttaaaaaattctgaa 527

                                                                       
Query: 121 gcacatttagaaaaacaactttgtgtgtggagttaatgactgaagaagaaacgggctcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gcacatttagaaaaacaactttgtgtgtggagttaatgactgaagaagaaacgggctcac 467

                                                                       
Query: 181 tgaataaattgtgattaaaaaccttagtatgatgcttaggcaccattgcctgtaggattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tgaataaattgtgattaaaaaccttagtatgatgcttaggcaccattgcctgtaggattc 407

                                                                       
Query: 241 ctagttattcttaagtaacataatctgcattatttctagttggtgttcattttcttttaa 300
           |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 406 ctagttattcataagtaacataatctgcattatttctagtgggtgttcattttcttttaa 347

                                                                       
Query: 301 ctgtttgagaatggccttaggtaaggcactatacctacagtaacccacaacggtcactat 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 346 ctgtttgagaatggccttaggtaaggcactatacctacagtaacccacaatggtcactat 287

                                                                       
Query: 361 gtgttcacttcactcctgccagccagctatcctgtcacctgggagctttcttatgacctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gtgttcacttcactcctgccagccagctatcctgtcacctgggagctttcttatgacctt 227

                                     
Query: 421 gacttcacacctggtgaaggaatagg 446
           ||||||||||||||||||||||||||
Sbjct: 226 gacttcacacctggtgaaggaatagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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