Query= MSMg01no143_l14.b1 MSMg01no143_l14.b1 CHROMAT_FILE:
MSMg01no143_l14.b1 PHD_FILE: MSMg01no143_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:21 2005
(532 letters)
>mm_chr4_14111634_14112566
Length = 933
Score = 859 bits (444), Expect = 0.0
Identities = 459/464 (98%), Gaps = 1/464 (0%)
Strand = Plus / Minus
Query: 4 ggaattccttcta-ctaataaattctattatttggaaacatgtagtaaatttttgtctat 62
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 464 ggaattccttctatataataaattctattatttggaaacatgtagcaaatttttgtctat 405
Query: 63 tcatcttttaataagcaaagtgtaatgttattctatatgatttcaccattgagaagagag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tcatcttttaataagcaaagtgtaatgttattctatatgatttcaccattgagaagagag 345
Query: 123 gcattataaacacagctgagcagacatttctttgagataataattttgattcttttgaat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gcattataaacacagctgagcagacatttctttgagataataattttgattcttttgaat 285
Query: 183 atatattgaagaagctgatttctatataacatggcagctgtacttctaaaatactattgc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 atatattgaagaagctgatttctatataacatggcagctgtacttctaaaatactattgc 225
Query: 243 aaggtaatacagtcattgaccttataattttttgataaagttgtattcatgattctttcg 302
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 224 aaggtaatacagtcattgaccttataattctttgataaagttgtattcatgattctttcg 165
Query: 303 tagctgcaccattttgcatctctcccatgaagggacacagcttccagtttttccacattt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 tagctgcaccattttgcatctctcccatgaagggacacagcttccagtttttccacattt 105
Query: 363 ctcctaacacttaccttatacatttttggtaacagccattgtggtggtttgaataggaat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 ctcctaacacttaccttatacatttttggtaacagccattgtggtggtttgaataggaat 45
Query: 423 cacccccataggctcatatatttaaatacttggtcatagagaat 466
||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 44 cacccccataggcccatatatttaaatacttggtcatagagaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 933
Length adjustment: 10
Effective length of query: 522
Effective length of database: 923
Effective search space: 481806
Effective search space used: 481806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_l14.g1 MSMg01no143_l14.g1 CHROMAT_FILE:
MSMg01no143_l14.g1 PHD_FILE: MSMg01no143_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:21 2005
(512 letters)
>mm_chr4_13966120_13967031
Length = 912
Score = 975 bits (504), Expect = 0.0
Identities = 510/512 (99%)
Strand = Plus / Plus
Query: 1 ctttagggggagaatcagtctttatcattaacgcctttaaactgctggacagcgttcact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttagggggagaatcagtctttatcattaacgcctttaaactgctggacagcgttcact 260
Query: 61 tacatatgaagggtagcaggtggtaaggtcagtacacattattcaaatctaaaataacaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacatatgaagggtagcaggtggtaaggtcagtacacattattcaaatctaaaataacaa 320
Query: 121 aaaacaaacacacacaaaaaaatccaccttcacagcaacctgtagtctagtgtttgatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaacaaacacacacaaaaaaatccaccttcacagcaacctgtagtctagtgtttgatag 380
Query: 181 acaactgggaaccacagaggggccaagttgacatacaaaattagttaccagtccaggatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaactgggaaccacagaggggccaagttgacatacaaaattagttaccagtccaggatt 440
Query: 241 gtgtctcacactgcttcacagcccttctcccacaggatttagctttagtgtcttactggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtctcacactgcttcacagcccttctcccacaggatttagctttagtgtcttactggc 500
Query: 301 tttttaaattttattctttgccctttgtttctaaactactctaacaatagtggtcttaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttttaaattttattctttgccctttgtttctaaactactctaacaatagtggtcttaat 560
Query: 361 gcttctgaaggaagctgtgcatttgcatatttgaagaactattaattttcacagtttgag 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 gcttctgaaggaagctgtgcatttgcatatttgaagaacaattaattttcacagtttgag 620
Query: 421 acatttatttgttggatgtttcccacagactatcctaagtttcgaatacaattatccttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acatttatttgttggatgtttcccacagactatcctaagtttcgaatacaattatccttt 680
Query: 481 aacagtcagtgtggcttaactgggtccagcag 512
||||||||||||||||||||||||||||||||
Sbjct: 681 aacagtcagtgtggcttaactgggtccagcag 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
