BAC Information

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BAC

Clone NameMSMg01-143L20
Chromosome4 (Build37)
Map Location 73,023,717 - 73,024,284
singlet/doubletsinglet
Overlap genenone
Upstream geneAldoa-ps2, EG384113, LOC667713, LOC100039698
Downstream geneOTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3, LOC100039774, Jmjd2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143L20.T7 (MSMg01no143_l20.b1)MSMg01-143L20.TJ (MSMg01no143_l20.g1)
ACCAG348006AG348007
length706697
length of high quality
(start - end)
365 (46 - 410)568 (71 - 638)
definitionCHROMAT_FILE: MSMg01no143_l20.b1 PHD_FILE: MSMg01no143_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:22 2005CHROMAT_FILE: MSMg01no143_l20.g1 PHD_FILE: MSMg01no143_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAAGAGAGATCCGCG
GAATTCACTGTGTACACCAGGCTGGCCTCAAACTCAGAAATTTGCCTGAC
TCTGCCTCCCAAGTGCTGGGACTAAAGGTACATGTCACCACTGCTTGGTA
CATGCTCACCTTTCAATACCTTCTTCCTGTCTTGTCTCTCTCTCTCTCTC
TCCTTTTCTCTCAACTCATTAATCATCATCAATTAACTCTCTGTCAACCT
GTTCAATACATTTCTATTTAATTCCTTACATATTTTGCTGTGATAGGTTG
TGGTGGTTTGAATACAGTTTGCCTAGGGAGTGGCACTACTAGGAGGTACA
ATCTTGTTGGAGGAAGTGTGCCACTGTGAGCTTTGAGAAAACTTCCTCCT
AGCTATGTAGACACCCCCCCTCTACTGTTTACCTTCACACCAATGTGTAG
AACTCTCAGCTCCTCCATCCTTGGATGCTGCCATGCTTCCACCTTGATGA
TAATGCACTGAACCTTTGAACCTGTAAACTAGCCCCAATTAAATGTTTTC
CTTTATAAAATATGCCTTGATCATGATGTCTTGCCATATTAATGTAAACC
CTAAAATATTTATATTTCATTATAATAATTGTCTATATACTCCTAATATA
AATGAATTATATACATATTATGACTTTTTATAAATTAACTCCTGAAAAAC
ACCATT
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGAAATACCGAATGGCAGAGAAG
CACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGCCCCAATGGGTAAGAAGGAC
ACATGCTCCACTGTGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
GAAAGAACAGGTGAGCTTTCAAATGCTACCATTTGATTCTTGGACCTACT
CTACGTCTTCTTTCTGTTTAGTAATAAAGGATCTCTTGACCTCACTAATC
TTTACACCTCAGCTGAAATGTCATAATGCTGATCATCATTTCTCTTCATT
TCAGCAACATGATAACCGTGCCCAAATCAGGAATTAAACAACGGGGACCA
TGATCTCAGAGGCTGAGTTTCTCTACCCGTTTCTGGGTGAAGGGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_l20.g1 MSMg01no143_l20.g1 CHROMAT_FILE:
MSMg01no143_l20.g1 PHD_FILE: MSMg01no143_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:22 2005
         (568 letters)



>mm_chr4_73023517_73024484
          Length = 968

 Score = 1044 bits (540), Expect = 0.0
 Identities = 561/568 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacctgagaaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacctgagaaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatc 260

                                                                       
Query: 61  atcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggct 320

                                                                       
Query: 121 aagatcaaaaattcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagatcaaaaattcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactc 380

                                                                       
Query: 181 ctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttc 240
           ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 ctccattgttgatgggattgcaggcttgtacaaccactctggatatcagtctggcggttc 440

                                                                       
Query: 241 ctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatat 500

                                                                       
Query: 301 ccagaagatgccccaatgggtaagaaggacacatgctccactgtgttcatagcagcctta 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagaagatgccccaacgggtaagaaggacacatgctccactgtgttcatagcagcctta 560

                                                                       
Query: 361 tttataatagccagaagctggaaagaacaggtgagctttcaaatgctaccatttgattct 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttataatatccagaagctggaaagaacaggtgagctttcaaatgctaccatttgattct 620

                                                                       
Query: 421 tggacctactctacgtcttctttctgtttagtaataaaggatctcttgacctcactaatc 480
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggacctactctacatcttctttctgtttagtaataaaggatctcttgacctcactaatc 680

                                                                       
Query: 481 tttacacctcagctgaaatgtcataatgctgatcatcatttctcttcatttcagcaacat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttacacctcagctgaaatgtcataatgctgatcatcatttctcttcatttcagcaacat 740

                                       
Query: 541 gataaccgtgcccaaatcaggaattaaa 568
           ||||||| |||| |||||||||||||||
Sbjct: 741 gataaccatgccaaaatcaggaattaaa 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)