BAC Information

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BAC

Clone NameMSMg01-144C10
Chromosome4 (Build37)
Map Location 76,819,346 - 76,819,851
singlet/doubletsinglet
Overlap genenone
Upstream genePtprd, LOC667858, LOC667862
Downstream geneLOC100039974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144C10.T7 (MSMg01no144_c10.b1)MSMg01-144C10.TJ (MSMg01no144_c10.g1)
ACCAG348300AG348301
length727782
length of high quality
(start - end)
511 (46 - 556)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no144_c10.b1 PHD_FILE: MSMg01no144_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:54 2005CHROMAT_FILE: MSMg01no144_c10.g1 PHD_FILE: MSMg01no144_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAATGAGTCACGCCCCAAGTGTTCATTTCATGGGCAATTTCTTCA
GGTGGCAAATATCAGCCAACATTTTCAGGTCCCAGCCTGGGTACAATTGT
TCATTTTGTCATGTGTGTTGCCCGAACGCATTCCTTTCAAGATATTTAAC
ATGAAGCCTTTTCTTGAAATGCATTCCCAAAATGTGTCTCTCTCTCTTTT
TTTCTGAGCAGCTTCCAGTATAATCTAAAAATGATTTAGTAGGATCAAAA
GAAGAAATTTTAAGTGGAACCATTTGTCATACTGTGCACTAGTAAATAAA
TACTCTGGTCCCCATAATGAGAGGGCAGGAGAATATATTAGTCTCTAGCC
ATTAGTCACACATTCATCCATAAAATAGTCACATCTCATTTGAATGGACA
TCCTCCAGCACATGTACTGGAAGAAACCATGTCCTTACTGGCACAACACT
GAAGACAAATTGCTTGGTAGAGTTTCCTCTATTTCATAACCCACATGAGC
ATAGTGATTGAGTTTGCAATTAATATTTCTGGATTCCTGCCCACCTACTC
CTTAGGATAATGTGAAAGCTGCAAGGTTGAAGTTTGAATTCAACTTTCCC
AGCTTATCCAAACATGTTCAAAAGCAGCGTTAATTCTCGGAGGCCATTGT
CCCATACAGCTATTCATTCTTTTATGG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAAGCAAGTGGATAGAACTAGAAA
ATATCATCCCGAGTGAGATAACCCAGACACAAAAGATCATACATGTATAT
CAGTGAGTATGTACTCACTGATAAGTGAATATTAACTTAAAACCTGTCAA
TGTCCTTGATACAACCCACAGACTGTATGAAGGTTACAAGGAAGAAAGAT
CAGGGTGAGGATGCTTCAGTCCTGCATTGAGGGGGGAAACAGGATGGTCA
CAGTAGGTAGAAGGAGAAGGGGACCTGTGAGGGAAAGAGGAGGGTGAGGA
GTTAAGGGGGTGGTATCAGCGAACTGGATTGGATGTTCCCTTCTCCTTTG
TTTACTCCTTTTTTTTTCCCCCCCCCCCCTCTTCCTCTTTTTCCTCTTTC
CCTCTTTTTTTCTCCCCCCCCTCCTTTTTTTTCTCAATCCCCTCTTTCCT
ACCTCCTTCCATAATTTTTTTTTTTCCTCTCTTTTCCTCCTCCCTTTCCC
TTCTTTTCTTCTTTCTTCTTTCCCTTTCTTACCTTTTTTTCCTTTCTCCC
CTTACCTTTCTTCCCTCTTTCCCCCTCCTTTTTCCTTTTTGTTTCATTCT
TCCACACTCTCTACCCATTTCACTTTCCTTTTCCCTTTTTTCCTCTTTTT
CCCCCTCTTCTTTTCCTTCTTTTTTCTCTCTTTCACTCTTCTCTCCCCTT
CTTTCTTTTTCTTTTTTCCCCTCCTTTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_c10.b1 MSMg01no144_c10.b1 CHROMAT_FILE:
MSMg01no144_c10.b1 PHD_FILE: MSMg01no144_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:54 2005
         (511 letters)



>mm_chr4_76819142_76820051
          Length = 910

 Score =  957 bits (495), Expect = 0.0
 Identities = 504/507 (99%), Gaps = 1/507 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaatgagtcacgccccaagtgttcatttcatgggcaatttcttcaggtggcaaa 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gaattctaatgagtcaagccccaagtgttcatttcatgggcaatttcttcaggtggcaaa 651

                                                                       
Query: 65  tatcagccaacattttcaggtcccagcctgggtacaattgttcattttgtcatgtgtgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tatcagccaacattttcaggtcccagcctgggtacaattgttcattttgtcatgtgtgtt 591

                                                                       
Query: 125 gcccgaacgcattcctttcaagatatttaacatgaagccttttcttgaaatgcattccca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gcccgaacgcattcctttcaagatatttaacatgaagccttttcttgaaatgcattccca 531

                                                                       
Query: 185 aaatgtgtctctctctctttttttctgagcagcttccagtataatctaaaaatgatttag 244
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aaatgtgtctctctct-tttttttctgagcagcttccagtataatctaaaaatgatttag 472

                                                                       
Query: 245 taggatcaaaagaagaaattttaagtggaaccatttgtcatactgtgcactagtaaataa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 taggatcaaaagaagaaattttaagtggaaccatttgtcatactgtgcactagtaaataa 412

                                                                       
Query: 305 atactctggtccccataatgagagggcaggagaatatattagtctctagccattagtcac 364
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 411 atactctggtccccataatgagagggcaggagaatatattagtctctagctattagtcac 352

                                                                       
Query: 365 acattcatccataaaatagtcacatctcatttgaatggacatcctccagcacatgtactg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 acattcatccataaaatagtcacatctcatttgaatggacatcctccagcacatgtactg 292

                                                                       
Query: 425 gaagaaaccatgtccttactggcacaacactgaagacaaattgcttggtagagtttcctc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gaagaaaccatgtccttactggcacaacactgaagacaaattgcttggtagagtttcctc 232

                                      
Query: 485 tatttcataacccacatgagcatagtg 511
           |||||||||||||||||||||||||||
Sbjct: 231 tatttcataacccacatgagcatagtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 910
Length adjustment: 10
Effective length of query: 501
Effective length of database: 900
Effective search space:   450900
Effective search space used:   450900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)