Query= MSMg01no144_c21.b1 MSMg01no144_c21.b1 CHROMAT_FILE:
MSMg01no144_c21.b1 PHD_FILE: MSMg01no144_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:56 2005
(702 letters)
>mm_chr4_84173605_84174706
Length = 1102
Score = 1309 bits (677), Expect = 0.0
Identities = 695/701 (99%), Gaps = 1/701 (0%)
Strand = Plus / Plus
Query: 3 gaattcc-cagatggatctcatcagactggatatgaagagaggaccagcctcatcctatt 61
||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattccacagatggagcttatcagactggatatgaagagaggaccagcctcatcctatt 261
Query: 62 tggttatctgaaacagggagggaagaatctacctgacagagacgtttacttcttaaggag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tggttatctgaaacagggagggaagaatctacctgacagagacgtttacttcttaaggag 321
Query: 122 aatttgctctatgaaacactgaattcctgagatggtttcctatattatatatgtatgtat 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aatttgctctatgaaacactgaattcctgagatggtttcctatattatatatgtatgtat 381
Query: 182 gtctgtgtgtgcgcacgggcatgtatgtgatacattcatgtgacacatacatgcatacat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtctgtgtgtgcgcacgggcatgtatgtgatacattcatgtgacacatacatgcatacat 441
Query: 242 acatacacacacacatataatgtaacctccaatatgacaatagcagtttctgtcctgaca 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 acatacacacacacatataatgtaacctccaatatgacaatagcagtttctgtcctgaca 501
Query: 302 cccagaaaaaaactgtcagtaatttacactgcctaaattcatgcgttatgtgacttacct 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cccagaaaaaaactgtcagtaatttacactgcctaaattcatgcgttatgtgacttacct 561
Query: 362 tctcaaggtataataagcattgtcaatatgcaatgctaagtctgtttacaattttaaaat 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tctcaaggtataataagcattgtcaatatgcaatgctaagtctgtttacaattttaaaat 621
Query: 422 aaatggaaaagggtacagttcatgaaagtgttttaagatcttgtcttgaaagataggaag 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aaatggaaaagggtacagttcatgaaagtgttttaagatcttgtcttgaaagataggaag 681
Query: 482 gcgaaagtgtttctacatattttcacaaagtagccacattgtaactggtttgacttttaa 541
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 682 gcgaaagtgtttctacatattttcacaaagtagccacattgtaactgctttgactttgaa 741
Query: 542 gatttctacacacacactccactccactcagcagtgtttgaagctacaggggtgttttta 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gatttctacacacacactccactccactcagcagtgtttgaagctacaggggtgttttta 801
Query: 602 tttgctattgtacaactgcaacaggggcagacttcctattattttgaggacattcatatg 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tttgctattgtacaactgcaacaggggcagacttcctattattttgaggacattcatatg 861
Query: 662 caaatgaatgctgacaatggaaatgaggtgctactcttgat 702
|||||||||||||||||||||||||||| ||||||||||||
Sbjct: 862 caaatgaatgctgacaatggaaatgaggcgctactcttgat 902
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space: 755664
Effective search space used: 755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no144_c21.g1 MSMg01no144_c21.g1 CHROMAT_FILE:
MSMg01no144_c21.g1 PHD_FILE: MSMg01no144_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:56 2005
(595 letters)
>mm_chr4_84324870_84325864
Length = 995
Score = 1036 bits (536), Expect = 0.0
Identities = 558/566 (98%), Gaps = 2/566 (0%)
Strand = Plus / Minus
Query: 32 cctgtagcagttgaaaacgttaagcagcaagaaacaagaaggaaatcttttttttgttg- 90
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995 cctgtagcagttgaaaacgttaagcagcaagaaacaagaaggaaatcttttttttgttgt 936
Query: 91 -tttttttgttgttgttttcgagacagggtttctctgtacagccctggctgtcctggaac 149
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 935 ttttttttgttgttgttttcgagacagggtttctctgtgtagccctggctgtcctggaac 876
Query: 150 tcactttgtagaccaggctggcctccaactcagaaatccacctgcctctgcctcccgagt 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tcactttgtagaccaggctggcctccaactcagaaatccacctgcctctgcctcccgagt 816
Query: 210 gctgggattaaaggcatgcggctagaaggaaatcttagcaatcatggttagtgtgacttg 269
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 815 gctgggattaaaggcatgcggctagaaggaaatcttagcaatcatgggtagtgtgacttg 756
Query: 270 gaagtcagagggttagggctgggaacgggtggagctacgcagtagagacatgctggcctg 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 gaagtcagagggttagggctgggaacgggtggagctacgcagtagagacatgctggcctg 696
Query: 330 ctgccttcatgctgccctgcggtcaatcccagcactctaaagaaagctggctcagtgttc 389
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ctgccttcatgctgccctggggtcaatcccagcactctaaagaaagctggctcagtgttc 636
Query: 390 ttccctttccaagttcatcatccctggaacatgggtggctcttggttacaaggtgcatgt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ttccctttccaagttcatcatccctggaacatgggtggctcttggttacaaggtgcatgt 576
Query: 450 gagtgttgaaggtaccatattctctcacactaatgtccagatcatagaaatgaccattta 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gagtgttgaaggtaccatattctctcacactaatgtccagatcatagaaatgaccattta 516
Query: 510 tttgttatctaccacttggggctttattaagtaaaatgatccttaccaaaataatcctca 569
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tttgttatctaccacttggggttttattaagtaaaatgatccttaccaaaataatcctca 456
Query: 570 catgaagtcctcagcggctcttccac 595
|||||||||||||| |||||||||||
Sbjct: 455 catgaagtcctcagtggctcttccac 430
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
