Query= MSMg01no144_j06.b1 MSMg01no144_j06.b1 CHROMAT_FILE:
MSMg01no144_j06.b1 PHD_FILE: MSMg01no144_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:26 2005
(649 letters)
>mm_chr4_87454401_87455451
Length = 1051
Score = 1218 bits (630), Expect = 0.0
Identities = 643/648 (99%), Gaps = 2/648 (0%)
Strand = Plus / Minus
Query: 4 ggaattctttctg--atatatctatacatatgaaaaagcttttgcagaactcttcattat 61
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 851 ggaattctttctgatatatatatatacatatgaaaaagcttttgcagaactcttcattat 792
Query: 62 ttttagcatatgttactacgttggaggtttttgttaagtactttattgtaggtttcataa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ttttagcatatgttactacgttggaggtttttgttaagtactttattgtaggtttcataa 732
Query: 122 gtaaataaaaatatttcataacttcccagtctgaacccactttcagttctgggtgaaatt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gtaaataaaaatatttcataacttcccagtctgaacccactttcagttctgggtgaaatt 672
Query: 182 ttacttgactatgagcttccaaaaatcaacaagatgggaaacggataacctagagtgaga 241
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 671 ttacttgactatgagcttccaaaaatcaacaagatgggaaatggataacctagagtgaga 612
Query: 242 ccatcacacagcaggatcctccaacttcaaaagccatgggaggctttacacatagctggg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ccatcacacagcaggatcctccaacttcaaaagccatgggaggctttacacatagctggg 552
Query: 302 cattgcaatattttctgtactccttgtaagttaaatttggtttggcagagaatttggggg 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cattgcaatattttctgtactccttgtaagttaaatttggtttggcagagaatttggggt 492
Query: 362 agtcgataaggctctgtaagtaggactttacagttttagccaaagaaaacaggctgtaga 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 agtcgataaggctctgtaagtaggactttacagttttagccaaagaaaacaggctgtaga 432
Query: 422 tttgatgactctatttgatttgttagtgccatatgcatggctttttgatcttgaaggttc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tttgatgactctatttgatttgttagtgccatatgcatggctttttgatcttgaaggttc 372
Query: 482 agtaaatgaatgaattgatatggatcagaactctgtcatgtgggaaagaaatcttaattt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 agtaaatgaatgaattgatatggatcagaactctgtcatgtgggaaagaaatcttaattt 312
Query: 542 gcctgtagtattgatactaacttaattatctaacacctgcatcccattgatggtaattct 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gcctgtagtattgatactaacttaattatctaacacctgcatcccattgatggtaattct 252
Query: 602 gttacgttatagttatattaaatgttaatagtatatacagacagcatt 649
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gttacgttatagttatattaaatgttaatagtatatacagacagcatt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1051
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1041
Effective search space: 665199
Effective search space used: 665199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_j06.g1 MSMg01no144_j06.g1 CHROMAT_FILE:
MSMg01no144_j06.g1 PHD_FILE: MSMg01no144_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:26 2005
(543 letters)
>mm_chr4_87329655_87330597
Length = 943
Score = 919 bits (475), Expect = 0.0
Identities = 525/545 (96%), Gaps = 7/545 (1%)
Strand = Plus / Plus
Query: 1 atgatcctaaagtgttcctaaatgccacagtgctcctttctatctatcacagagaacgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 atgatcctaaagtgttcctaaatgccacagtgctcctttctatctatcacagagaacaca 260
Query: 61 atgtggtgaatgctatcaaacaaattctcatcaccaacaatcaggacatactttctttaa 120
| ||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 261 aagtggtgaatgctatcgaacaaatcctcatcaccaacaattaggacatactttctttaa 320
Query: 121 aacagggaagcactacacactgacaggtagcctaccctcaagtctacatagtcaaaagag 180
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 321 aacagggaagtactacacactgacaggtaggctaccctcaagtctacatagtcaaaaggg 380
Query: 181 acatactgttaaaagggggaaatatgcctaaaataaatatctttaattatacataaattg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatactgttaaaagggggaaatatgcctaaaataaatatctttaattatacataaattg 440
Query: 241 ctgtgtaatgatttctagatatatttcttttttgtttgatggttttgtttttttaacttg 300
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtttaatgatttctaggtatatttcttttttgtttgatggttttgtttttttaacttg 500
Query: 301 gggagaaagtttatttggcttacccatccttattatagatagatctttgttaagccaagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggagaaagtttatttggcttacccatccttattatagatagatctttgttaagccaagg 560
Query: 361 ctggaacagaagtagggggcatggaggaatactgtttactggcttgctctctatgacttg 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttggaacagaagtagggggcatggaggaatactgtttactggcttgctctctatgacttg 620
Query: 421 ctttcatattcaacccagaaccacctgcccagaaatggccctgcccacaatgggctgggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttcatattcaacccagaaccacctgcccagaaatggccctgcccacaatgggctgggc 680
Query: 481 cctcccacatcaatcatta--ttaaaaaaaaaaatgcctcacagatatgtcaacaggtca 538
||||||||||||||||||| |||||||| |||| |||||||||||||||||| ||
Sbjct: 681 cctcccacatcaatcattaatttaaaaaa-----tgccccacagatatgtcaacaggcca 735
Query: 539 tataa 543
|||||
Sbjct: 736 tataa 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
