Query= MSMg01no144_j14.b1 MSMg01no144_j14.b1 CHROMAT_FILE:
MSMg01no144_j14.b1 PHD_FILE: MSMg01no144_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:28 2005
(289 letters)
>mm_chr4_80626434_80627122
Length = 689
Score = 518 bits (268), Expect = e-151
Identities = 284/291 (97%), Gaps = 4/291 (1%)
Strand = Plus / Plus
Query: 1 aggttatagttacaaaggctttgtttcattttattttgttctgctttttcttgttttctg 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 aggttatagttacaaaggctttgtttcattttattttgttctgcttttacttgttttctg 260
Query: 61 ttcattgcaatttaaactctgacttaaaagatatatacaatgaacacaaatgcaaatttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcattgcaatttaaactctgacttaaaagatatatacaatgaacacaaatgcaaatttg 320
Query: 121 atgaaaagaatgttattatgtgacttttcctgaggagacacaaacaaatatcaagatatc 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaaaagaacgttattatgtgacttttcctgaggagacacaaacaaatatcaagatatc 380
Query: 181 tttacatggctccaacaaaagaccaaagaaaaaattctacccaagttgtacttactggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttacatggctccaacaaaagaccaaagaaaaaattctacccaagttgtacttactggtt 440
Query: 241 ttgtcaacttgn--attaagctggagttatcacagagaaaggagcttcagt 289
||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtcaacttgacaa--aagctggagttatcacagagaaaggagcttcagt 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no144_j14.g1 MSMg01no144_j14.g1 CHROMAT_FILE:
MSMg01no144_j14.g1 PHD_FILE: MSMg01no144_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:28 2005
(301 letters)
>mm_chr4_80691948_80692648
Length = 701
Score = 559 bits (289), Expect = e-164
Identities = 298/301 (99%)
Strand = Plus / Minus
Query: 1 tcaccaactgaaatcctctatcagcaacattcctcgtgttcatgaacactttcctttttt 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 tcaccaactgaaatcctctatcagcaacattcctcgtgtttatgaacactttcctttttt 442
Query: 61 gtgaggccatgtaaccttttcttccccattatttctcaaaataatctaaatttgtcttat 120
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgaggccatgtaaccttttcttttccattatttctcaaaataatctaaatttgtcttat 382
Query: 121 taatagcaaaagataattcatgttttcttaaccagataataggcctcctacaatgttgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatagcaaaagataattcatgttttcttaaccagataataggcctcctacaatgttgtt 322
Query: 181 gtttttgttacaaacaatgcctatcatatctgttaattttatatataataccttataaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttttgttacaaacaatgcctatcatatctgttaattttatatataataccttataaag 262
Query: 241 agcacataagaaaatcaagtgaatttaatgtttaatgaaatattgtgatgagcatgataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcacataagaaaatcaagtgaatttaatgtttaatgaaatattgtgatgagcatgataa 202
Query: 301 a 301
|
Sbjct: 201 a 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space: 202064
Effective search space used: 202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
