Query= MSMg01no144_n12.b1 MSMg01no144_n12.b1 CHROMAT_FILE:
MSMg01no144_n12.b1 PHD_FILE: MSMg01no144_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:46 2005
(657 letters)
>mm_chr4_85362006_85363062
Length = 1057
Score = 1201 bits (621), Expect = 0.0
Identities = 645/653 (98%)
Strand = Plus / Minus
Query: 5 gaattcacacaggtgccatcagaagtcttttatagagaaagttgaccatgacagtttaag 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 gaattcacacaggtggcatcagaagtcttttatagagaaagttgaccatgacagtttaag 798
Query: 65 gtcaaattctcttaatttgccctcaaacaagacagaagaaagaactgccccttcttcaga 124
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 797 gtcaaattatcttaatttgccctcaaacaagacagaagaaagaactgccccttcttcata 738
Query: 125 cctgtgggtttctgactcccagatgattccctgcatccttcactgctggctggctttgag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cctgtgggtttctgactcccagatgattccctgcatccttcactgctggctggctttgag 678
Query: 185 atcgttccctgtgtgtgcaaaagttgttcctctcgaactcaagagtgggacgtttctccc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 atcgttccctgtgtgtgcaaaagttgttcctctcgaactcaagagtgggacgtttctccc 618
Query: 245 acatagctttcactgactgcccatatttatcagcaaggactgaacaggaaacttcccttt 304
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 617 acatagctttcactgactgcccatattcatcagcaaggactgaacaggaaacttcccttt 558
Query: 305 atctttttctgcttgatagtttgactctgggatatgatgtgataccctaattttcttgta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atctttttctgcttgatagtttgactctgggatatgatgtgataccctaattttcttgta 498
Query: 365 tttaagcaatatcaaaagcaaaatattggcatctccaaaaatgaatgtggagagaattct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tttaagcaatatcaaaagcaaaatattggcatctccaaaaatgaatgtggagagaattct 438
Query: 425 tcttgatggaatctttgatactcatacacatatgctgtctttagtgcaggattcccatct 484
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tcttgatgaaatctttgatattcatacacatatgctgtctttagtgcaggattcccatct 378
Query: 485 tttcctttcattttgagatcattgctgctcaagtatactccttcctgctatctgactctg 544
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 377 tgtcctttcattttgagatcattgctgctcaagtatactcctttctgctatctgactctg 318
Query: 545 tatctgtaggctcaagaaaggttggatcatttaaattttttctatacggaaagatttagc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tatctgtaggctcaagaaaggttggatcatttaaattttttctatacggaaagatttagc 258
Query: 605 acaaaatttgttgggttaaacatattttctagaatcaatctcttcggcttgtt 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 acaaaatttgttgggttaaacatattttctagaatcaatctcttcggcttgtt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_n12.g1 MSMg01no144_n12.g1 CHROMAT_FILE:
MSMg01no144_n12.g1 PHD_FILE: MSMg01no144_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:46 2005
(417 letters)
>mm_chr4_85254405_85255221
Length = 817
Score = 634 bits (328), Expect = 0.0
Identities = 381/417 (91%), Gaps = 30/417 (7%)
Strand = Plus / Plus
Query: 1 caatagcgttttaaaacagctaagtggtacaatgccactgcttggataacacacacgcac 60
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 213 caatagcgctttaaaacagctaagtggtacaatgtcactgcttggataacacacacg--- 269
Query: 61 acacacacacacacacacacacacacacacacacacacacacaccaaaacaatggcaaca 120
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ---------cacacacacacacacacacacacacacacacacaccaaaacaatggcaaca 320
Query: 121 aaaccaaaaatcagtaattttaatgattgttacaatttttaaacaaaagaaaaggcccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaccaaaaatcagtaattttaatgattgttacaatttttaaacaaaagaaaaggcccat 380
Query: 181 caaattcactggtgctttaataaaaatttgttttcatctaactgtagaggaaatgtttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaattcactggtgctttaataaaaatttgttttcatctaactgtagaggaaatgtttat 440
Query: 241 tgcagctagtaataaaatagttttataaagaaatgaaattgttttataatatgagatgac 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcagctagaaataaaatagttttataaagaaatgaaattgttttataatatgagatgac 500
Query: 301 gcacacatactcataatgagagagagagagagagagagagagagagagagagagagagag 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 gcacacatactcataatgagagagagagagagagagagagagagagagagagag-g---- 555
Query: 361 agagagagagagagattacntccttgaagagtacacctgtacacctgtgaaataaag 417
|||||| ||||||||||||| ||||||| |||||||||||||||
Sbjct: 556 -------------gattacatccttgaagagtagacctgtagacctgtgaaataaag 599
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 108
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space: 329664
Effective search space used: 329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
