Query= MSMg01no145_a08.b1 MSMg01no145_a08.b1 CHROMAT_FILE:
MSMg01no145_a08.b1 PHD_FILE: MSMg01no145_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:00 2005
(595 letters)
>mm_chr4_88574705_88575702
Length = 998
Score = 1006 bits (520), Expect = 0.0
Identities = 571/594 (96%), Gaps = 13/594 (2%)
Strand = Plus / Minus
Query: 5 gaattctctccagccaggttagtctaaaggctggcttcatgtttaatgggagatgatgtc 64
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 885 gaattctctccagccaggttagtctaaaggctggcttcatgtttagtgggagatgatgtc 826
Query: 65 tcaaaacatagcattagaacaatagaggaagacacccaacatacttctttgccctgtgca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 tcaaaacatagcattagaacaatagaggaagacacccaacatacttctttgccctgtgca 766
Query: 125 tatgtggtcatggacacatgcatctgcacatacatgtgcaagccccctacacacacacac 184
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 765 tatgtggtcatgaacacatgcatctgcacacacatgtgcaagccccctacacacacacac 706
Query: 185 acacacacacacacacacacacacacacacacacacacaaacacacacagaaaattttaa 244
||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 705 acacacacacacacaca---------a-acacacacacaaacacacacagaaaattttaa 656
Query: 245 atctggaaggatccagattctctttggggctaatgattatcatggccagggaaggtagga 304
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 655 atctggaaggatccagattctctttggggctaatgattatcgtggccagggaaggtagga 596
Query: 305 tatttaccaaggctcctggaagggtaaatggtagacctaagagtctataaatgggtaatc 364
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 595 tatttaccaaggctcctggaagggtaaatggtagacccaagagtctataaatgggtaatc 536
Query: 365 ttgcctttctaacacagtagccttttttttttttt--tttggagtattttctacaaagtt 422
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 535 ttgcctttctaacacagtagcctttttttttttttggtgtggagtattttctacaaagtt 476
Query: 423 acaaataggacccactggtcacatcccttgt-aaaaactgggtcagtatattttgtttat 481
| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 475 ataaataggacccactggtcacatcccttgtaaaaaactgggccagtatattttgtttat 416
Query: 482 taaaaatattaaataaagctcaccatttagaactacttgcagaggacctgaagtcagttc 541
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 taaacatattaaataaagctcaccatttagaactacttgcagaggacctgaagtcagttc 356
Query: 542 ctagcacccacatgggtgcttacagccatctttacctccagtctctggggatct 595
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 355 ctagcacccacatgggtgcttacagccatctttacctccagtctccggggatct 302
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 998
Length adjustment: 10
Effective length of query: 585
Effective length of database: 988
Effective search space: 577980
Effective search space used: 577980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_a08.g1 MSMg01no145_a08.g1 CHROMAT_FILE:
MSMg01no145_a08.g1 PHD_FILE: MSMg01no145_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:00 2005
(615 letters)
>mm_chr4_88471008_88472024
Length = 1017
Score = 928 bits (480), Expect = 0.0
Identities = 584/624 (93%), Gaps = 16/624 (2%)
Strand = Plus / Plus
Query: 1 aaggctggtgacacctgtaccagttctttcatttttcagtattgctatagaacttgtact 60
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 201 aaggctggtgacacctgtaccagttctttta-ttttcagtattgctatagaacttgtact 259
Query: 61 caatttatgta----aaatagttgattttagttaactgcaatatatatttgttacatgtt 116
|| |||||| | |||||||| ||||||||||||||||| ||||| || ||||||||
Sbjct: 260 cactttatggaaaataaatagttaattttagttaactgcaacatatagttattacatgtc 319
Query: 117 ttagat--taaaaaaatt--ctgattgtacacccatgctgtgtgtttacatttgcatgtg 172
|||||| ||||| | || ||||||||| |||||| || || ||||||||| |||
Sbjct: 320 ttagattgtaaaa----tccct-attgtacacatatgctgcgtattcacatttgcaagtg 374
Query: 173 tgtacagtggtgccagatgtcaatcaatgtcaggtttttacctcattttctgtgactgga 232
|||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 375 catacagtggcgccagatgccaatcaatgtcaggttttaacctcattttctgtgactgga 434
Query: 233 tctctcacttaagcaagggctcaccattgctgtagcctgactggctggtgagcttgtaat 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 435 tctctcacttaagcaagggctcaccattgctgtagcctgactggctggtgagcttgtgat 494
Query: 293 ggctgttcttggatgtcaacttgactaaatgtgggattaactgaaag-tccaaaagataa 351
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 495 ggctgttcttggatgtcaacttgactaaatgtgggattaactgaaagctc-aaaagataa 553
Query: 352 gggcacatctgagacttagttttgctcaacttggagtgggaaaatccactctaatcagga 411
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 554 gggcacatctgagacttagttttgctcaacttgcagtgggaaaatccactctaatcagga 613
Query: 412 tctctaaaatgggaagacacagctttaattcggatctttgaggtgtgaagactcacctgt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tctctaaaatgggaagacacagctttaattcggatctttgaggtgtgaagactcacctgt 673
Query: 472 gctatgagccaggccttctgctggaagcctgtgtaagtccatgaaggaaagatgcttttg 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gctatgagccaggccttctgctggaagcctgtgtaagtccatgaaggaaagatgcttttg 733
Query: 532 ctgcttgcctgtgtgctttccccttgccagcaatccattccttcactggcactagagcct 591
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 734 ctgtttgcctgtgtgctttccccttgccagcaatccattccttcgctggcactagagcct 793
Query: 592 aatggtgttggaatctggcacata 615
|| |||||||||||||||||||||
Sbjct: 794 aaaggtgttggaatctggcacata 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1017
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1007
Effective search space: 609235
Effective search space used: 609235
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
