BAC Information

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BAC

Clone NameMSMg01-145I16
Chromosome4 (Build37)
Map Location 18,962,499 - 18,963,048
singlet/doubletsinglet
Overlap geneLOC435772
Upstream geneMmp16, LOC667251
Downstream geneCngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145I16.T7 (MSMg01no145_i16.b1)MSMg01-145I16.TJ (MSMg01no145_i16.g1)
ACCAG349320AG349321
length713710
length of high quality
(start - end)
131 (428 - 558)550 (74 - 623)
definitionCHROMAT_FILE: MSMg01no145_i16.b1 PHD_FILE: MSMg01no145_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:39 2005CHROMAT_FILE: MSMg01no145_i16.g1 PHD_FILE: MSMg01no145_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAGAGATCCGCG
GAATTCTAACAATCTACCCTAATCTTCTGGCTCTTTCTTGCTTGCTGGTT
CATTCTATTTTACCTTGGGTCTAGCTTTTTCTCTCTTCAACCTGTCTCTG
TAAAACTGTCCTGGTAAATTTGTCTGTTATGTTTCTTCTTTTTTTATCTA
TGTTGTTTGTTCTCTCTTAACTAGCTTCCCTTTCTGCTCTGATCTCATCA
GATCTGAGCATATCCTATTTTGTCAAGTCTTTCTCTGATTCATTACTTTG
TCTGCCACTCAATTAGGCTATCTCTTTCAAACATGGATGCTTTCTTCTAC
AAACTGATTTTACCATCATCATTTGGGATTAAAGGTATGTACTAATAGCA
TATCAGTTTTCTACCCAGAGGGATTAAAGGTGTATGCTAATGCTGAACCA
AATCATAACTAGAAACAGCTATTTTCAGTAAATAACACATTCTCAGGGTT
CACAGTGGGATCAAATATTATGCAACAACCATGTTTGAAAATGACATCTA
GTTGAGGAGCAGACTAAGAGACAAATCAGAGAAAGATTTGAAAGAATCTG
TCATAGAACATACATGCCCAACTCTCCATAGAACAGCATCAGAAAGGGGT
CATATATAAGAGTAGAACTAGGAATAAGAGGCAGTCAATTGGGTCAGTTC
ATTCAGTTCCATG
CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTACAGGAGTTGTAGAGAAGGGTTCA
TTTTCAGGATCATGGGTGCTTCAAAGGTGTCCATTTCACTGAAAACCAAA
CAGAAACCAAAACCAAACCAACAAAATCAAATAACCCATACCATCTTGGA
TGATAACTTAGAAAATCTAGTCTTGCATGCATCAATTTCTGGCAGCTCTG
CTAGTGGCATAGTTTCTTGCAGGTTAGCATCTGGATAGAGTTCCCCCTCA
GCAGCTGCCATTGTTTATATAACCCCCAAGAGATGCCTCTGATTCCTCCA
AGTTTGAGTGGTTTTCTGAAACTTAAGCATTTTGTTTACTTACAGAATCT
TAACAAGCCCCTCTCCAGAAAGGAACGCTTGAGACTGAGGACATAGCTAC
AATCGACTTCTATTAATGTGGCTGTTTACTTTATATTGACATCTGCCTAT
TCTTACTTTGGATAAACCTGTAGACACCAGATTGTTGGGCCACTTCATAA
GAGCCTCTGGACTGTTTTCTTACAGCCTGTGTTGTTATATTACTGTCAGC
AATGGAACAGTTAGTTCCTTGTACTTCTCAGTAGCACTCAGGGTTGACAG
TCAAAAGTTTCAGACATTCTAGAGGGTGGGTAGTGCCATCTTATTGTGGA
TTAAGCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_i16.g1 MSMg01no145_i16.g1 CHROMAT_FILE:
MSMg01no145_i16.g1 PHD_FILE: MSMg01no145_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:39 2005
         (550 letters)



>mm_chr4_18962299_18963248
          Length = 950

 Score = 1017 bits (526), Expect = 0.0
 Identities = 544/550 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttacaggagttgtagagaagggttcattttcaggatcatgggtgcttcaaaggtgtcca 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 750 cttacaggagttgtagagaagggtttattttcaggatcatgggtgcttcaaaggtgtcca 691

                                                                       
Query: 61  tttcactgaaaaccaaacagaaaccaaaaccaaaccaacaaaatcaaataacccatacca 120
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tttcaccaaaaaccaaacagaaaccaaaaccaaaccaacaaaatcaaataacccatacca 631

                                                                       
Query: 121 tcttggatgataacttagaaaatctagtcttgcatgcatcaatttctggcagctctgcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 630 tcttggatgataacttagaaaatctagtcttgcatgcatcaatttctggcaactctgcta 571

                                                                       
Query: 181 gtggcatagtttcttgcaggttagcatctggatagagttccccctcagcagctgccattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gtggcatagtttcttgcaggttagcatctggatagagttccccctcagcagctgccattg 511

                                                                       
Query: 241 tttatataacccccaagagatgcctctgattcctccaagtttgagtggttttctgaaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tttatataacccccaagagatgcctctgattcctccaagtttgagtggttttctgaaact 451

                                                                       
Query: 301 taagcattttgtttacttacagaatcttaacaagcccctctccagaaaggaacgcttgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 taagcattttgtttacttacagaatcttaacaagcccctctccagaaaggaacgcttgag 391

                                                                       
Query: 361 actgaggacatagctacaatcgacttctattaatgtggctgtttactttatattgacatc 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 390 actgaggacatagctacaatcgacttctattaatgtggctgtgtactttatattgacatc 331

                                                                       
Query: 421 tgcctattcttactttggataaacctgtagacaccagattgttgggccacttcataagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgcctattcttactttggataaacctgtagacaccagattgttgggccacttcataagag 271

                                                                       
Query: 481 cctctggactgttttcttacagcctgtgttgttatattactgtcagcaatggaacagtta 540
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 270 cctctggactgttttcttacagcctgtattgttatattactgtcagcaatggaacagtta 211

                     
Query: 541 gttccttgta 550
           ||||||||||
Sbjct: 210 gttccttgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)