BAC Information

Click to search

BAC

Clone NameMSMg01-145J17
Chromosome4 (Build37)
Map Location 18,962,589 - 18,962,744
singlet/doubletsinglet
Overlap geneLOC435772
Upstream geneMmp16, LOC667251
Downstream geneCngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145J17.T7 (MSMg01no145_j17.b1)MSMg01-145J17.TJ (MSMg01no145_j17.g1)
ACCAG349366AG349367
length699694
length of high quality
(start - end)
550 (45 - 594)156 (376 - 531)
definitionCHROMAT_FILE: MSMg01no145_j17.b1 PHD_FILE: MSMg01no145_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:44 2005CHROMAT_FILE: MSMg01no145_j17.g1 PHD_FILE: MSMg01no145_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTATCATAATTTGCGGCGCTAAACGACTCCTATTTTCAGAAATCCGCGGA
ATTCTAACAATCTATTCTAATCTTCTGGCTCTTTCTTGCTTGCTGGTTCA
TTCTATTTTACCTTGGGTCTAGCTTTTTCTCTCTTCAACCTGTCTCTGTA
AAACTGTCCTGGTAAATTTGTCTGTTATGTTTCTTCTTTTTTTATCTATG
TTGTTTGTTCTCTCTTAACTAGCTTCCCTTTCTGCTCTGATCTCATCAGA
TCTGAGCATATCCTATTTTGTCAAGTCTTTCTCTGATTCATTACTTTGTC
TGCCACTCAATTAGGCTATCATTTTCAAACATGGATGCTTTCTTCTACAA
ACTGATTTTACCATCATCATTTGGGATTAAAGGTATGTACTAAGAGCATA
TCAGTTTTCTAGCCAGACGGATTAAAGGTGTATGCTAAGGCTGAACCAAA
TCATAACTAGAAACAGCTATTTTCAGTAAATAACACATTCTCAGGGTTCA
CAGTGGGATCAAATATTATGCAACAACCATGTTTGAAAATGACATCTAGT
TGAGGAGCAGACAAAGAGACAAATCAGAGAAAGATTTGAAAGAATCTGTC
AGAGAAAATACATGCCCAACTCTCCATAGAACAGCACAGGAGAGGAGCCA
TATATAAGAGCAGAACTAGGAAAAAGAGGCAGTCAAATGGTTCAGTTCA
NCCGATGCAGTGGGAGGCCGGNGGCGCCTGTTTTCGAACCCGCGNGAACN
ANAGAAGGTTTCCAGAACCCGGGACAGGAGNAGNAGAGAAGGGNACAANN
NCAGGAACAAGGGAGCACCACAGGCGNCCAGANCACGGAAAACCAAACAG
AAACCAAAACCAAACCAACAAAANCAAACAACCCAAACCACCGAGGAGGA
GAACTNAGAAAACCAAGACNGGCAGGCAGCAAATCCAGGCAGCTCGGCTA
GTTTTATAGTTTCTTGCAGGTTAGCATCTGGATAGAGTTCCCCCTCAGCA
GCTGCCATTGGTAATATATTTCTTTTTTAGAGGCCNCNGANNCCNCCAAG
AGNGAGAGGTTTTCTGACCCCCAAGCATTTTGTTTACTTACAGAATCTTA
ACAAGCCCCTCTCCAGAAAGGAACGCTTGAGACTGAGGACATAGCTACAA
TCGACTTCTATTAATGTGGCTGTTTACTTTATATTGACATCTGCCTATTC
TTACTTTGGATAAACCTGTAGACACCAGATTGTTGGGCCACTTCATAAGA
GCCTCTGGACTGTTTTCTTACAGCCTGTGTTGTTATATTACTGTCAGCAA
CGGAACAGTTAGTTCCTTGTACTTCTCAGGAGCACTCAGGGTTGACAGCC
AAAATTTTCTTACTTTCTAACAGGGGGCGTAGCGGCATCTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_j17.g1 MSMg01no145_j17.g1 CHROMAT_FILE:
MSMg01no145_j17.g1 PHD_FILE: MSMg01no145_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:44 2005
         (156 letters)



>mm_chr4_18962389_18962944
          Length = 556

 Score =  294 bits (152), Expect = 2e-84
 Identities = 155/156 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattttgtttacttacagaatcttaacaagcccctctccagaaaggaacgcttgagactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 cattttgtttacttacagaatcttaacaagcccctctccagaaaggaacgcttgagactg 297

                                                                       
Query: 61  aggacatagctacaatcgacttctattaatgtggctgtttactttatattgacatctgcc 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 296 aggacatagctacaatcgacttctattaatgtggctgtgtactttatattgacatctgcc 237

                                               
Query: 121 tattcttactttggataaacctgtagacaccagatt 156
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 tattcttactttggataaacctgtagacaccagatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 556
Length adjustment: 8
Effective length of query: 148
Effective length of database: 548
Effective search space:    81104
Effective search space used:    81104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)