NGGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAAATGCGCG
GAATTCAGCTCAATATTGCCGATGCTTCATCCCCAAAGAGTGATTCTGTT
TTAAAGATTGGGGGTGGGTTATATGACAGAGATAGCATGTGCTACCAAAG
CCTGGAATATTTACTTCTCAACTTTGTAAGAACAAACAAACAAACAAACA
AAAAGGTATTGATCCTAGTGAGAAACTGAACGCCTGAGTATTTACATGTT
AGAGGAAGGCAGAGAAAGACATAGAGAAAGGAGAGGCTCAGCTGGAGCAG
AACACGGCAAGACTCCAGTGCAGGCACCCACATCATCAGACCCTTTAGAT
ACATGGCCCATTCCTCAGCTTCACCAGCTCCTGTTCCTCCTGAGGCTTCC
AGGCCTCTGGCTCCTGCCTGCCCGCCTCTCCCTGCCCTGGCACATGTGCA
TCGGGGAAACTAATACTCTGCTGGCCTTCCTACATCTTTCTCCTCTATCT
GTTCACAGCTCATCTACCAAAGCATTTACCATCAATGCTTCGCAGTCCAT
TAGACTCACTTCCATATCTCCACTAGTACCGAGTCTCCTACATGTGCACA
CCATTATCAGCCTGCCATATTCTAATACACTATAAATCCTTTGTTTAAAA
AGCCAGTTCTTCAGCCTGACCTGAGCCTTGCTTTTCCAGACCCTTCAT

NCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTGAAGAATGATCTATGACAGCTGAA
CCTTTTACTTTGAGTGGGTTTATTGAACAAATAACAAGCAACAATTAAAG
AACAAATAGCAAGTGATAGATAGATAGATAGATAGATAGATAGATAGATA
GATAGATAGATAGATAGATAGATAGATAGATAGATAGATACCCCCGAGAG
GGAGCCCCCCAGCTTCCAACCAGCCGTTCATAACACCCCACAGGCACACC
TGGCGCACCATGATCAGCAGTATTTTTTTTGATACCTGTCTTTTCGGTGT
CTTAGGATCTTCATCACCACCTCACTGCGCGTCCTCTGATCAGTCACGCG
GTTTCTCGATCGACCTTTTCTCCCCCCCCACGATCTCCTAGTTTCCGTCC
TATGCTATATTTCCACTCCGTCATAACGCTCGCTGTTCTCTGTTTTACTT
TCCTACTTGTCCTTCTTCCTCGCGTCCGCATCCCCATAGCCCTTATCCTT
CACGCTGATTCCTTGTCTCCTTTATTTCCTCCTGTTTTTCGTTCTTCCCT
TTTTTTTTACCTTCTCTCCCTCCGTTCCTCTCCTTTTTCTTTTTCCGCTT
CCCTTTTTTCCCACTTCGTTACAACCCCCTCCCATCTCTACTATTTCTCT
TCTCCTATCTCCACCTCCTTCC

Query= MSMg01no145_p10.b1 MSMg01no145_p10.b1 CHROMAT_FILE:
MSMg01no145_p10.b1 PHD_FILE: MSMg01no145_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:12 2005
         (577 letters)



>mm_chr4_40119873_40120849
          Length = 977

 Score = 1040 bits (538), Expect = 0.0
 Identities = 568/580 (97%), Gaps = 5/580 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattcagctcaatattgccgatgcttcatccccaaagagtgattctgttttaaagattg 62
           ||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 gaattcagctcaatactgtagatgcttcatccccaaagagtgattctgttttaaagattg 875

                                                                       
Query: 63  ggggtgggttatatgacagagatagcatgt-gctaccaaagcctggaatatttacttctc 121
           ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 874 gggatgggttatatgacagagatagcatgtggctaccaaagcctggaatatttacttctc 815

                                                                       
Query: 122 aactttgtaag----aacaaacaaacaaacaaacaaaaaggtattgatcctagtgagaaa 177
           |||||||||||    |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 aactttgtaagaacaaacaaacaaacaaacaaacaaaaaggtattgatcctagtgagaaa 755

                                                                       
Query: 178 ctgaacgcctgagtatttacatgttagaggaaggcagagaaagacatagagaaaggagag 237
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 754 ctgaacgcctgagtatttacatgttagaggaaggcagagaaagacatggagaaaggagag 695

                                                                       
Query: 238 gctcagctggagcagaacacggcaagactccagtgcaggcacccacatcatcagaccctt 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 gctcagctggagcagaacacggcaagactccagtgcaggcacccacatcatcagaccctt 635

                                                                       
Query: 298 tagatacatggcccattcctcagcttcaccagctcctgttcctcctgaggcttccaggcc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tagatacatggcccattcctcagcttcaccagctcctgttcctcctgaggcttccaggcc 575

                                                                       
Query: 358 tctggctcctgcctgcccgcctctccctgccctggcacatgtgcatcggggaaactaata 417
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tctggctcctgcctgcctgtctctccctgccctggcacatgtgcatcggggaaactaata 515

                                                                       
Query: 418 ctctgctggccttcctacatctttctcctctatctgttcacagctcatctaccaaagcat 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ctctgctggccttcctacatctttctcctctatctgttcacagctcatctaccaaagcat 455

                                                                       
Query: 478 ttaccatcaatgcttcgcagtccattagactcacttccatatctccactagtaccgagtc 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ttaccatcaatgcttcgcagtccattagactcacttccatatctccactagtaccgagtc 395

                                                   
Query: 538 tcctacatgtgcacaccattatcagcctgccatattctaa 577
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tcctacatgtgcacaccattatcagcctgccatattctaa 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)