Query= MSMg01no146_c13.b1 MSMg01no146_c13.b1 CHROMAT_FILE:
MSMg01no146_c13.b1 PHD_FILE: MSMg01no146_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:36 2005
(253 letters)
>mm_chr4_84104735_84105387
Length = 653
Score = 429 bits (222), Expect = e-125
Identities = 248/258 (96%), Gaps = 6/258 (2%)
Strand = Plus / Plus
Query: 1 tgagggccaggtccaaagcaaccgttcatcacatctatcactagagctggcccgggccag 60
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 201 tgagggccaggtccaaagcaaccgttcatcaaatctatcactagagctggctcgggccag 260
Query: 61 aaagatggcgccacaccttcctcaatgagacaaggcaaatgagggaaatccactcaggtt 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagatggcaccacaccttcctcaatgagacaaggcaaatgagggaaatccactcaggtt 320
Query: 121 tgaaagaccacagctacccataaataagaacagcacactgagccacag-gtaagccacag 179
|||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct: 321 tgaaagaccacagctacccataaataagaacagcacacagagccacagag-aagccacag 379
Query: 180 ggagatattaagctttttgtttgtttgtttgtttgttt--gtt--ttggttggttggttg 235
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 380 ggagatattaagctttttgtttgtttgtttgtttgttttggttggttggttggttggttg 439
Query: 236 gtttggtttggtttttcc 253
||||||||||||||||||
Sbjct: 440 gtttggtttggtttttcc 457
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space: 157136
Effective search space used: 157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no146_c13.g1 MSMg01no146_c13.g1 CHROMAT_FILE:
MSMg01no146_c13.g1 PHD_FILE: MSMg01no146_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:36 2005
(706 letters)
>mm_chr4_84278045_84279150
Length = 1106
Score = 1154 bits (597), Expect = 0.0
Identities = 606/609 (99%)
Strand = Plus / Minus
Query: 1 gttccaggaacccttaggctttttactactgattaatggacatctgtataatctatacaa 60
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gttccaggaattcttaggctttttactactgattaatggacatctgtataatctatacaa 550
Query: 61 aaagctgtaaaatacattcattaatctattctacaaactaagattaatttgagtcatctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aaagctgtaaaatacattcattaatctattctacaaactaagattaatttgagtcatctg 490
Query: 121 tgggtatcttataaggtcacggttctaatttaatttggtaggaattgttagagatttgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tgggtatcttataaggtcacggttctaatttaatttggtaggaattgttagagatttgaa 430
Query: 181 tgagattttaaaatcacttcccaggagaaggaaaaatacctttggaagaagccagtgagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgagattttaaaatcacttcccaggagaaggaaaaatacctttggaagaagccagtgagt 370
Query: 241 gttcttctgggcaaagcttgaatacttcttgaatgttctcttccttcctagatgaaagtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gttcttctgggcaaagcttgaatacttcttgaatgttctcttccttcctagatgaaagtt 310
Query: 301 ctgtacacctggtgtgatagtagctattgaaatcatgagagtttttcctgagtttaagtt 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 309 ctgtacacctggtgtgatagtagctattgaaaccatgagagtttttcctgagtttaagtt 250
Query: 361 gttctcttgtcacaagtgaagtttttcacgtataatttttgttttcttttgtttattttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gttctcttgtcacaagtgaagtttttcacgtataatttttgttttcttttgtttattttt 190
Query: 421 gagtcagggtcttggtatgttgcccaggccagtcctaaataccaaactcaagaggttgtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 gagtcagggtcttggtatgttgcccaggccagtcctaaataccaaactcaagaggttgtc 130
Query: 481 ctgtcttaagtccagccattgtgcttggtgagatatgtggttgttacaagccactataga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ctgtcttaagtccagccattgtgcttggtgagatatgtggttgttacaagccactataga 70
Query: 541 actgtttaatatacagtgtttgacatacagacttcttgctcttatagaaaaggagtttgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 actgtttaatatacagtgtttgacatacagacttcttgctcttatagaaaaggagtttgt 10
Query: 601 tagggcaat 609
|||||||||
Sbjct: 9 tagggcaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space: 762816
Effective search space used: 762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
