Query= MSMg01no146_e07.b1 MSMg01no146_e07.b1 CHROMAT_FILE:
MSMg01no146_e07.b1 PHD_FILE: MSMg01no146_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:50 2005
(604 letters)
>mm_chr4_140606640_140607643
Length = 1004
Score = 1110 bits (574), Expect = 0.0
Identities = 586/590 (99%), Gaps = 1/590 (0%)
Strand = Plus / Minus
Query: 15 cgaggccagcctggtctacagagtgagttccaggacagccagggctacacagagaaaccg 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 cgaggccagcctggtctacagagtgagttccaggacagccagggctacacagagaaaccg 822
Query: 75 tgtctcgaaaaaccaaaaaaaaaaaaaaaaaaaaaaagatttcagagctctgtgtttcga 134
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 tgtctcgaaaaacc-aaaaaaaaaaaaaaaaaaaaaagatttcagagctctgtgtttcga 763
Query: 135 gggtggtgggtgcagaaagacattctcctgactcctagctagagccttcctcctgtatgt 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gggtggtgggtgcagaaagacattctcctgactcctagctagagccttcctcctgtatgt 703
Query: 195 tctggggatgtggccacagggctgtagttgtttgtacacaaatctagctcttggcctctc 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tctggggatgtggccacagggctgtagttgtttgtacacaaatctagctcttggcctctc 643
Query: 255 ttgccgaccttcctgttcccagctttcttgttccctaggtgttgcagccacacacacccg 314
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 642 ttgccgaccttcctgttcccagctttcttggcccctaggtgttgcagccacacacacccg 583
Query: 315 ggttcctcccaggtccagtccaccttgtctcaggaatgagtagaacacatgtgggggcta 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ggttcctcccaggtccagtccaccttgtctcaggaatgagtagaacacatgtgggggcta 523
Query: 375 gtgcccctccactctagccagaagtcaacctcagcccttgtcccttgtcagccccactcc 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gtgcccctccactctagccagaagtcaacctcagcccttgtcccttgtcagccccactcc 463
Query: 435 aggtcccagagatggcctcactgctgtcgctgcaggaggaaaaccagctgctgcagcagg 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aggtcccagagatggcctcactgctgtcgctgcaggaggaaaaccagctgctgcagcagg 403
Query: 495 agctgtcccgcgtggaggacctgctggcccagagccgcgcagagcgggatgagctggcca 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 agctgtcccgcgtggaggacctgctggcccagagccgcgcagagcgggatgagctggcca 343
Query: 555 tcaagtacaatgctgtcaatgatagggtgggtgctgcggcccggcctggg 604
|||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 342 tcaagtacaatgctgtcaatgagagggtgggtgctgcggcccggcctggg 293
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_e07.g1 MSMg01no146_e07.g1 CHROMAT_FILE:
MSMg01no146_e07.g1 PHD_FILE: MSMg01no146_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:50 2005
(600 letters)
>mm_chr4_140472965_140473964
Length = 1000
Score = 1106 bits (572), Expect = 0.0
Identities = 593/600 (98%)
Strand = Plus / Plus
Query: 1 gccagggctacacagagaaactctgtcttgcccaaacaaaacaaaacaccccaattcctg 60
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 201 gccagggctacacagagaaactctgtcttgaaaaaacaaaacaaaacaaaacaattcctg 260
Query: 61 tctaacaagaaaaaaatgttccggtcttaaggctaaaggcatggttgagtatcttgtgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctaacaagaaaaaaatgttccggtcttaaggctaaaggcatggttgagtatcttgtgtg 320
Query: 121 ggttccatctgtaacacagcagagacagacagacagacagtgttggactccaactaaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttccatctgtaacacagcagagacagacagacagacagtgttggactccaactaaaca 380
Query: 181 agtgcaagattagcctttcacaatctcctgtcaccagctggtcatggcagccttggaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgcaagattagcctttcacaatctcctgtcaccagctggtcatggcagccttggaggc 440
Query: 241 ctacccctctggaactctcttgctgacacccttgaaccacctagcccaggctccgtctga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctacccctctggaactctcttgctgacacccttgaaccacctagcccaggctccgtctga 500
Query: 301 ccctctgtctgttcttcctacattgcagcacctgctggggccaaaaccttcagcctgaag 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccctctgtctgttcttcctacagtgcagcacctgctggggccaaaaccttcagcctgaag 560
Query: 361 cactcggaaggtgtgaaggtggaggtcgtacgtgatggagaggcagaggaggtggtcacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cactcggaaggtgtgaaggtggaggtcgtacgtgatggagaggcagaggaggtggtcacc 620
Query: 421 aacggcaagcagcgctgggccctgtcacccagcagcacactgcggctcagcatggcccag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacggcaagcagcgctgggccctgtcacccagcagcacactgcggctcagcatggcccag 680
Query: 481 gccagcacagaggccagcagcgacaaggtaccatggccgggaagacagtgtcccaggact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gccagcacagaggccagcagcgacaaggtaccatggccgggaagacagtgtcccaggact 740
Query: 541 gaggaggcccaaagccatgctggaatagcctgagccacagaaacagtgggagccatatag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaggaggcccaaagccatgctggaatagcctgagccacagaaacagtgggagccatatag 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
