Query= MSMg01no146_l14.b1 MSMg01no146_l14.b1 CHROMAT_FILE:
MSMg01no146_l14.b1 PHD_FILE: MSMg01no146_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:50 2005
(555 letters)
>mm_chr4_56387548_56388501
Length = 954
Score = 1021 bits (528), Expect = 0.0
Identities = 548/560 (97%), Gaps = 11/560 (1%)
Strand = Plus / Plus
Query: 1 aaaaataaagtcattcataatttatgcataaacaagaatagcttttgtttctgaggactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaataaagtcattcataatttatgcataaacaagaatagcttttgtttctgaggactc 260
Query: 61 aagaaggtttcatagccctgtcttgccgtcccactccggaggagcagttcctgtttcaag 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaggtttcatagccctgtcttgctgtcccactccggaggagcagttcctgtttcaag 320
Query: 121 gcagtttctataggcctataaatactttgatgttcaaacatctggaacttatatttggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagtttctataggcctataaatactttgatgttcaaacatctggaacttatatttggtg 380
Query: 181 ttgactaatgagcattattattttattatgtatttatatgtgatctaaaagaaatttgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgactaatgagcattattattttattatgtatttatatgtgatctaaaagaaatttgag 440
Query: 241 gttagatgccacataactctgtatatttttt-----gaacaatgacaaattctttttacc 295
|||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 gttagatgccacataactctgtatat-----acagcgaacaatgacaaattctttttacc 495
Query: 296 cattacattgatgatttattacagggcataaggagttctgagttgttcacttgacatata 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cattacattgatgatttattacagggcataaggagttctgagttgttcacttgacatata 555
Query: 356 attgtgcttgggaagatagtaatggtacagagagatgtaaaattgcccctaacgtatatt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 attgtgcttgggaagatagtaatggtacagagagatgtaaaattgcccctaacgtatatt 615
Query: 416 gttaaaatactttgtaagtggacaaaatggactccagaggtactatttcactcttcttaa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gttaaaatactttgtaagtggacaaaatggactccagaggtactatttcactcttcttaa 675
Query: 476 aaaagaaaaaaaaaatcaaaggatggccaatatggcaacaaactggagttcttttgaata 535
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aaaagaaaaaaaaa-tcaaaggatggccaatatggcaacaaactggagttcttttgaata 734
Query: 536 agtaaagatgagccctggtc 555
||||||||||||||||||||
Sbjct: 735 agtaaagatgagccctggtc 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 954
Length adjustment: 10
Effective length of query: 545
Effective length of database: 944
Effective search space: 514480
Effective search space used: 514480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_l14.g1 MSMg01no146_l14.g1 CHROMAT_FILE:
MSMg01no146_l14.g1 PHD_FILE: MSMg01no146_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:50 2005
(502 letters)
>mm_chr4_56514120_56515021
Length = 902
Score = 752 bits (389), Expect = 0.0
Identities = 469/503 (93%), Gaps = 21/503 (4%)
Strand = Plus / Minus
Query: 1 aaaaatatgttttataatttaagggttccacctaagatcactgctcacattgctgtacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aaaaatatgttttataatttaagggttccacctaagatcactgctcacattgctgtacct 484
Query: 61 cagctcaggaagctctgtgcctcagagggattaatgaagattaactacgtttgtgacctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cagctcaggaagctctgtgcctcagagggattaatgaagattaactacgtttgtgacctt 424
Query: 121 ctggcgtgttccgggtgcttagtgtaggctaattattaaaggtgggatgatgaatccagg 180
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ctggaatgttccgggtgcttagtgtaggctaattattaaaggtgggatgatgaatccagg 364
Query: 181 aggaagtggtgtctcctctgtggcttctcatgaagagaacgaagggtgaccacccagaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aggaagtggtgtctcctctgtggcttctcatgaagagaacgaagggtgaccacccagaag 304
Query: 241 cagcttagagaagaccttctgtagcctgattgttaatcttggggctcagtgacagcagtt 300
||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct: 303 cagcttagagaagaccttctgtagcctgaatgttaatcttggggttcagtgactgcagtt 244
Query: 301 ccttgattcagaggatcagcaatgaggccccaagactctgcagttctctctctctttctt 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 243 ccttgattcagaggatcagcaatgaggccctaagactctgcagttctctctctctctctt 184
Query: 361 tctttctt---tc--t---t---tc--t---ttctttctttctttctttctttctttctt 404
|| ||| | || | | || | |||||||||||||||||||||||| |||
Sbjct: 183 tccttcctccctccctccctccctccctcccttctttctttctttctttctttct--ctt 126
Query: 405 tctttctttctttc-tttctttctttctttctatctttctttctttctttctttctttct 463
||| || ||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 125 tctctccttctttcctttctttctttctttctttctttctttctttctttctttctttct 66
Query: 464 ttctttctttctctctctctttc 486
||||| ||||| || ||||||||
Sbjct: 65 ttctt-ctttc-ctttctctttc 45
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
