BAC Information

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BAC

Clone NameMSMg01-146L19
Chromosome4 (Build37)
Map Location 78,054,050 - 78,054,522
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039974, LOC100039996
Downstream geneLOC100040026, LOC100040036, LOC667922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146L19.T7 (MSMg01no146_l19.b1)MSMg01-146L19.TJ (MSMg01no146_l19.g1)
ACCAG350194AG350195
length1,2221,195
length of high quality
(start - end)		811 (96 - 906)778 (88 - 865)
definitionCHROMAT_FILE: MSMg01no146_l19.b1 PHD_FILE: MSMg01no146_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:52 2005CHROMAT_FILE: MSMg01no146_l19.g1 PHD_FILE: MSMg01no146_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCATTCTTTTNNNNAAACATTGGGCGCTATAGACTCCTATAGGGAGAG
GATCCGCGGAATTCCTACAGCGATAAACATCCTTTTAAAGACTGGCTGGA
TATAAAATGAACTCAACAAAACCCTTAAACTTCCTCTACCCCAGTGATAA
TAGGCCAAGTGTGAAATACCCTTTAAAGTAGCCACAAATAGTATAAAGTA
CCTTGGTGTAACTCTAACCAAGCAAGTAAAGGATCTGTATGACAAGAGCC
TCAATTCCTTGAAGAAACAAATTTAAAAAGGTATCAGAAGATGGAAGATC
TCTAATTCTCATCAATAGGTAAGATTAACATAGTGAAAATAGCCATCTTT
CTAAAAGCAATCTAGAGATTCAATGCAATTCTCATTCAAATTTCAACCCA
TTACTTAAGTATCTCAAAAGAGCAATTCTCTGCTTTATATGGAAAAAATA
CCCAGGATAGCAGAACAATTCTGAAAAATAAAAGACTATTGGGAGGAATC
AACATCCCTTACCTCAAGTTGTACTACAGAGCACTAGTGATAAAAACTAC
ATGGTACTGGTTTAGAGACAGATATGTTGATCAATGGAATTGAGTCTAAG
ACCCAGAAATAAACCCACACATCTATGGACACTTGATTTTGATAAGCCAA
AGCTACTCTGAGGTTCCATCTTACACTCATCAGAATGGGTAAGATCAAAA
CTCAAGAGAGCACATTCTGGCAAGGATATTGAGCAAGTCAAACACTCCTT
ATTGGTGGGATTGTAATATTGTTCAATAACTTTGGAAATAAACTTTGCAG
ATTCTCATAAAACTAGGAATAGTTCTACCTCAAGATCCCCCTATACCACT
CCTGGGAATATACCCAAAAGATGCTCCACCGTCCTACAAAGACTATTATG
TTTATAGCAGCTTTATTCATAATAGCCCAGTGGAAACTTACCTAAATGAC
TCTTAACTGAAGAATGGATAAAGAAAATTCCATTACCCAAGGAATTACTA
TTCCTCTTTTTAAAACCAGACATTTTGTAATTGTGGAGGCAAAAGGAGTG
GTCCTTACAAAAATCATCCCGGAAAAAGGGAATCCCTTTTCCTAAAGGAA
AAGGCGGGGGGAATACATCCCATTTTTATTGGGGTTTTAGGAATAAAAAA
TAGGGATATCCCCGCTTTTTTTTCTCCCAACCCCACAAAAATTAATCATT
TCTGGAACATTCCCCTACAAAG

NCCCTGATTTTTTTTTTAAGCATGGAGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTATAAGACACAACACACTT
TAACCTCAAACAATGATGTCTAAATGAGGGGTGGGCCCAGTGACAAATCA
AAGAAAGATTTGTCAGAATGAATCAGAGATAGACTATGCCCAACTCTCTG
GAGACAAGGCTATTTAAAAGCAGCACAGAGAGAGTGAAGACAGTTCAGTC
AATTCAGTTGGTCACTGGGAGTCAGTGCAGTGAGTGCAGTGCAGTGGAGT
TGAGTTCATTTTTGAGTTCAAGCAGTTCAGTGCATGTCTGGAGAAGCAAT
TGAAGCGGGAGAATAAGAAGGAATCAGACAATTAGAACAAATTGCCATAC
ATAGTTATTTTGAAGCTAAGCAGAGCAATTTGGTGAGAAGTTGAAATGAC
CCAGATTGAATCAGTCAGCTTTGGAGAGGAGTTTGAACAAGAACAGCTCA
ATTGAACAAGCTAGATAAATTTCAGAAGGGACTAGAAAATAGGAGCTTAT
TCAGCAGTAAGTCTCCAAGATGATAGTTACATTAAGTGAATACATGATAG
GTTGGCAGAATACATGGAACAAATTTGCTTTTCTTATTGTTCACTATAAA
TTGGTTCTTTAATTAGGCAATAGAGGAAAGGAGACTAATGCTAGGCTTGT
CAAGGACTCTGAAAATTCCAGTAACAACATTATGTTCACTCTTCTACTTT
ATTAATATAACATCTATTCATATAAATATTCTGATATGTTATCTTCATTT
GACAAACAAACAAAATTGGTTTTTTAGCAGAAGATATGGCATATATTGAC
AGTCTCTTAATTTAAGGTAATGAGTTCTGTTATTTGTAATTTAATTTTCA
CTGGATAAAAGCCAAAAAATACCATAAGAAGTTGTTTCTTTCTCTCAGTC
TATGAAACCATGAAAAGATGATTCAATTGCTAAGAACAGGTGCTTCTTAA
AAAGAAACCAAGTTTCATTTCCCAGTACCCTTAACAATTAAAAGGAAACT
AAATGGGCACTCCCATTTCAAAGAATCTGAAAAATTCTTAAAGTGAAAAA
CCGGGTTTTTTGTTTAACAACTTATTTCTACTTTCTAACATCCATTAATT
GGGTTTGCCCTCTTTTCCCCTTTTTCTATATTTTTATTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_l19.g1 MSMg01no146_l19.g1 CHROMAT_FILE:
MSMg01no146_l19.g1 PHD_FILE: MSMg01no146_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:52 2005
         (778 letters)



>mm_chr4_78053345_78054522
          Length = 1178

 Score =  891 bits (461), Expect = 0.0
 Identities = 470/473 (99%)
 Strand = Plus / Minus

                                                                        
Query: 306  tgccatacatagttattttgaagctaagcagagcaatttggtgagaagttgaaatgaccc 365
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1178 tgccatacatagttattttgaagctaagcagagcaatttggtgagaagttgagatgaccc 1119

                                                                        
Query: 366  agattgaatcagtcagctttggagaggagtttgaacaagaacagctcaattgaacaagct 425
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1118 agattgaatcagtcagctttggagaggagtttgaacaagaacagctcaattgaacaagct 1059

                                                                        
Query: 426  agataaatttcagaagggactagaaaataggagcttattcagcagtaagtctccaagatg 485
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1058 agataaatttcagaagggactagaaaataggagcttattcagcagtaagtctccaagatg 999

                                                                        
Query: 486  atagttacattaagtgaatacatgataggttggcagaatacatggaacaaatttgctttt 545
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998  atagttacattaagtgaatacatgataggttggcagaatacatggaacaaatttgctttt 939

                                                                        
Query: 546  cttattgttcactataaattggttctttaattaggcaatagaggaaaggagactaatgct 605
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 938  cttattgttcactataaattgtttctttaattaggcaatagaggaaaggagactaatgct 879

                                                                        
Query: 606  aggcttgtcaaggactctgaaaattccagtaacaacattatgttcactcttctactttat 665
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878  aggcttgtcaaggattctgaaaattccagtaacaacattatgttcactcttctactttat 819

                                                                        
Query: 666  taatataacatctattcatataaatattctgatatgttatcttcatttgacaaacaaaca 725
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818  taatataacatctattcatataaatattctgatatgttatcttcatttgacaaacaaaca 759

                                                                 
Query: 726  aaattggttttttagcagaagatatggcatatattgacagtctcttaatttaa 778
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758  aaattggttttttagcagaagatatggcatatattgacagtctcttaatttaa 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 778
Length of database: 1178
Length adjustment: 10
Effective length of query: 768
Effective length of database: 1168
Effective search space:   897024
Effective search space used:   897024
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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