BAC Information

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BAC

Clone NameMSMg01-146O24
Chromosome4 (Build37)
Map Location 29,287,518 - 29,288,149
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665141, LOC100040773, Epha7, LOC100040907, LOC100040811
Downstream geneLOC665185
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146O24.T7 (MSMg01no146_o24.b1)MSMg01-146O24.TJ (MSMg01no146_o24.g1)
ACCAG350342AG350343
length1,2191,221
length of high quality
(start - end)
572 (130 - 701)632 (136 - 767)
definitionCHROMAT_FILE: MSMg01no146_o24.b1 PHD_FILE: MSMg01no146_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:19 2005CHROMAT_FILE: MSMg01no146_o24.g1 PHD_FILE: MSMg01no146_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCTTNNNNAAACCAGTGCGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCTCTTTGATGCGTCCCCTTAAGAATTCCAAGAAAACTG
CAATACTATATAGGTTCCCGGTATTGTCATTGATTAACTTTCAAAAATGG
AAGGTAACTCAATATTGCTGAAGACACCATATACTTCAAACTATCAGTTT
TGAGAAATTGAACTGGATATGACTCAGAAGCCCCCGCTTAAGGATTAGAT
TTTATAAAATGACAAAATGCCATCCAACTTGCCAAGGGAGAAAATTACCA
AAGTTCTTATCCAGCCATTATGCCTAAAAGCTACAATGACCAGAATGACA
GGATGTCCTTAAAGATGCAATAGTGGCAGTACTGTCTTGGCAGCTACTAA
CAGGTCTCTAATTCTGTCTACATGCCTGAATGGGAGGGAATCCCTGTTTG
GCAATGCAAACCTACTCAGCTGCTTGTGGGTGGCTAGCCACAGAATCTAG
AAAAAAATCCTACTTTCCTAAACCAGTATCATCCCTAATTTCATTCCAAA
TAAGTATCCTTATATCCACAAGTAAGTGTATCTCTCGACCCTCATCCAGA
AGCTTCTCTTTGCCGCATTATCCCTAGCACAACTGACTAAAATGCAAGCA
ACCAGTGACCTGGGGAGTTCAGCCCTAGATAATACATCTACAATGTAACC
ATTACACATAAGGACAAAGGCACCCAGGAACAGGGATAGAATAATTCTTA
ACAGCCAGAAGATCATGACAGTCTGTTACAAGACTGTATGTTTTATATTT
GATAGGCTATCCTCACTCGTAAACTCTAAACAATATAGTTGGCTACACAA
GGCCTGTATAATGACTACCTAAACTGACGTCTCCAAGAAGGTAAAGAAAA
TTCTCAAAGAACCCATCCCCAGATTAAGAATTACTTACAATTAATACCTA
TAATAGGAAAAATCATACTTTCCCCATGTAGAACCCCCCAACACTTTATT
CTGATATCCAAGGGCTCCGCCCTTAAAAATATTTTTTTAAAATCCAAATC
TTTTTAATAACCCCCCAAATTGGCATTTTTTTAATTTTATTTAACATTAA
CTCCCTCTTACCTTTTTTAAAAACCTCACTTTAAATTCACCTTCTTCTTT
GGTTGTAATTCCCTTATAATACCTTTTTTTACCATACTTATATGTACAAA
TTTTCTATCTTTTCACATC
NCCCACCCTTNNNNATACCCATTGGAGGCTGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTAACGCCTTAAANTGN
GAACCTTGAAATTAATTAAACCTTTAAAAACCAAGCTACAGCAAGCCAAC
CTATACCATTTTATTTCTTATGCATATGGATTCCTACAGAACAATTCTCT
GTTCAATATTATGATTCCCTAACTCATAAAGAAAATATTTTTGATGACAC
ATGTAGAAGTGAGATTGTCATAATTTTTAAAATGATTTTTAGTTAAGTGG
CTAATGATTCAAATCTCTTTGGTGTACTTTGTATTTTGATGTCTCCTGTG
GTGAACATAATAGGCATTATTTATTCTGATTCAAACCTTGTATTACTTTC
TAATGGCAATTATTCTAATATTGACATATCTTAGATTAAAATTTCATAGC
ATTCCTCTCAAAATTATTTCAGTTATGTTCATTTATCATCAATCCAAAGT
AAGTAACAGATTTCAGAGTTCTCTACTTAAGTGACAGGAAAAATTAAATG
TGCATTGATGTTAATGCTGATTACTTATTTGTAAAATTTAGAAAAGAGGC
TGAGAAGATGAGCTAGTGAGTCAAGAACTCTATTTGCAGGCATGAAGACC
TCAGTTCAAAGTCCAAGAACACATACAAAGTCAGACACAGTAGCACACTT
CGTTAACCCAAGTTCTATGAGGGAGACAGAAGTTGATACAGGAAAATCAC
AGAAATTGGAAGGCCAGTTTTCATAGAAGAGTCAGTCTTAAACAGTATTG
GATCAAAACAAGGTGATGGGGAAAGGATGTCCTCCATACACAGGATGGTA
TGCACTTACTGAGAAGGAGAGAGAGAATAGAGAGAGGAGAATGGAGAGAA
AAGAAAGCATGCACACCTACATTTTTTTAAAAGTTTTTATTTTAATTTAT
TTTATTTTATTTATTTATTTAATTATTTTAATTAATTAATTAATTTAATT
AATTTAATTTAATTCCGGCTTTTCCAAGACAGGGTTTTCTCCTGGGTAAC
CCTTGGCTGGTCCCGGGAAACCCACTTTTTTTAAAACCAGGCTGGGGCCC
CCTAACCTCTCAAAAAAATACCTGGCCTTCTGCCCCTCCCCAGGAGGTGG
GGATAATAATAAAAGGGGGATCTCTCTCCTGTTCGGGCGGTTGTTTCCAC
TTCAAAATTTTTTAAAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_o24.g1 MSMg01no146_o24.g1 CHROMAT_FILE:
MSMg01no146_o24.g1 PHD_FILE: MSMg01no146_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:19 2005
         (632 letters)



>mm_chr4_29287318_29288349
          Length = 1032

 Score = 1145 bits (592), Expect = 0.0
 Identities = 622/632 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctacagcaagccaacctataccattttatttcttatgcatatggattcctacagaacaat 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctactgcaagccaacctataccattttatttcttatgcatatggattcctacagaacaat 260

                                                                       
Query: 61  tctctgttcaatattatgattccctaactcataaagaaaatatttttgatgacacatgta 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctctgttcaatactatgattccctaactcataaagaaaatatttttgatgacacatgta 320

                                                                       
Query: 121 gaagtgagattgtcataatttttaaaatgatttttagttaagtggctaatgattcaaatc 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 gaagtgagattgtcataatttttaaaattatttttagttaagtggctaatgattcaaatc 380

                                                                       
Query: 181 tctttggtgtactttgtattttgatgtctcctgtggtgaacataataggcattatttatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctttggtgtactttgtattttgatgtctcctgtggtgaacataataggcattatttatt 440

                                                                       
Query: 241 ctgattcaaaccttgtattactttctaatggcaattattctaatattgacatatcttaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgattcaaaccttgtattactttctaatggcaattattctaatattgacatatcttaga 500

                                                                       
Query: 301 ttaaaatttcatagcattcctctcaaaattatttcagttatgttcatttatcatcaatcc 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 ttaaaatttcatagcattcctctcaaaattagttcagttatgttcatttatcatcaatcc 560

                                                                       
Query: 361 aaagtaagtaacagatttcagagttctctacttaagtgacaggaaaaattaaatgtgcat 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaactaagtaacagatttcagagttctctacttaagtgacaggaaaaattaaatgtgcat 620

                                                                       
Query: 421 tgatgttaatgctgattacttatttgtaaaatttagaaaagaggctgagaagatgagcta 480
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgatgttaatgctgattacttatatgtaaaatttagaaaagaggctgagaagatgagcta 680

                                                                       
Query: 481 gtgagtcaagaactctatttgcaggcatgaagacctcagttcaaagtccaagaacacata 540
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 681 gtgagtcaagaactctatttgcaggcatgaagaactcagttcaaagtccaagaacacata 740

                                                                       
Query: 541 caaagtcagacacagtagcacacttcgttaacccaagttctatgagggagacagaagttg 600
           |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 741 caaagtcagacacagtagcacacttctttaacccaagttctatgatggagacagaagttg 800

                                           
Query: 601 atacaggaaaatcacagaaattggaaggccag 632
           |||||||| |||||||||||||||||||||||
Sbjct: 801 atacaggagaatcacagaaattggaaggccag 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)