BAC Information

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BAC

Clone NameMSMg01-147B04
Chromosome4 (Build37)
Map Location 7,729,836 - 7,730,352
singlet/doubletsinglet
Overlap genenone
Upstream geneTox, LOC100039421, LOC666700
Downstream geneCar8, LOC100039494, LOC100039505, LOC100039478, Rab2, EG666752, LOC666760, Chd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147B04.T7 (MSMg01no147_b04.b1)MSMg01-147B04.TJ (MSMg01no147_b04.g1)
ACCAG350443AG350444
length724727
length of high quality
(start - end)		666 (54 - 719)532 (84 - 615)
definitionCHROMAT_FILE: MSMg01no147_b04.b1 PHD_FILE: MSMg01no147_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:33 2005CHROMAT_FILE: MSMg01no147_b04.g1 PHD_FILE: MSMg01no147_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCNNCCCCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCATCCATAGACTGGCTGCCTCCAGATGTCAGGCAACT
ATTTTTAAAGAGCAACTACCTTCTGCAATGGAAGCTCTTCAGACATGTGG
TTTACATTTGAGTTAATCTTCTCACCCATCTGCCCACAAAAATGGACACA
CTTTATTGTGTATTTCTTAAGCTCACATTGGGAATATGTGTTATCCTAGA
ATGGAACAATAAAAGATACAAGAAAGCACGTTGCTTAAGTCAAACAGATG
AGTCTTGATTTTTAAAATGAATGTACAACAACCATTTTTTTTTTAACTAG
AGGAAGTAAAATAAAATTATGATTTTCAATTTAATTTATTATTGAATATT
TACATACTAGTGCTGTATTTACATCATTTCAACCCCTCCCCTAACTACCT
TTCCTCCATGTCCCCAACTCTTTCTCAAATCTATGACCTCTTCTTTAATT
ATTATTGTTACATGCTCTTACTTCGTAAACTACATCTCTTTCAAAATGAG
AGGAGCTAGAATGGAACTTAACCACCTCAAATTTAACTTGAAAGGAAATT
GTCATTACTACTGTGTTCATGCTGAGCAGTAATTGTCTCTACAGACTTTT
CTCCACTGCTATATACAAAATTCATTAAAAAACCATGCTAAGTTTGTTTG
CCCGGCTCTCCATAGCCAGTATTN

CAANNCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCG
AATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGG
AAATGCAAATCAAAACAACCCTGAGATTCCACCTCAGACCAGTCAGAATG
GCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGA
AAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCAC
TCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCG
GAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAAC
TGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAA
TAGCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATA
CAGAAAATGTGGTGCATTTACACAATGGAGTACTACTCAGCTATTAAAAA
GAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCA
TCCTGAGTGAGGTAACACATTTACAAAGGAACTCACACAATATGTACTCA
CTGATAAGTGGATATTAGCCCAAAACCTAGGATATCCAATATATAAGATA
CAATTTCCTAAACACATGACACTTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_b04.b1 MSMg01no147_b04.b1 CHROMAT_FILE:
MSMg01no147_b04.b1 PHD_FILE: MSMg01no147_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:33 2005
         (666 letters)



>mm_chr4_7729287_7730352
          Length = 1066

 Score =  977 bits (505), Expect = 0.0
 Identities = 515/519 (99%), Gaps = 2/519 (0%)
 Strand = Plus / Minus

                                                                        
Query: 144  cacactttattgtgtatttcttaagctcacattgggaatatgtgttatcctagaatggaa 203
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 cacactttattgtgtatttcttaagctcacattgggaatatgtgttatcctagaatggaa 1007

                                                                        
Query: 204  caataaaagatacaagaaagcacgttgcttaagtcaaacagatgagtcttgatttttaaa 263
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 caataaaagatacaagaaagcacgttgcttaagtcaaacagatgagtcttgatttttaaa 947

                                                                        
Query: 264  atgaatgtacaacaaccattttttttttaactagaggaagtaaaataaaattatgatttt 323
            ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 946  atgaatgtacaacaacca--ttttttttaactagaggaagtaaaataaaattatgatttt 889

                                                                        
Query: 324  caatttaatttattattgaatatttacatactagtgctgtatttacatcatttcaacccc 383
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888  caatttaatttattattgaatatttacatactagtgctgtatttacatcatttcaacccc 829

                                                                        
Query: 384  tcccctaactacctttcctccatgtccccaactctttctcaaatctatgacctcttcttt 443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828  tcccctaactacctttcctccatgtccccaactctttctcaaatctatgacctcttcttt 769

                                                                        
Query: 444  aattattattgttacatgctcttacttcgtaaactacatctctttcaaaatgagaggagc 503
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 768  aattattattgttacatgctcttacttcgtaaactatatctctttcaaaatgagaggagc 709

                                                                        
Query: 504  tagaatggaacttaaccacctcaaatttaacttgaaaggaaattgtcattactactgtgt 563
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708  tagaatggaacttaaccacctcaaatttaacttgaaaggaaattgtcattactactgtgt 649

                                                                        
Query: 564  tcatgctgagcagtaattgtctctacagacttttctccactgctatatacaaaattcatt 623
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 648  tcatgctgagcagtaattgtctctacagacttttctccactgctatatacaaaactcatt 589

                                                   
Query: 624  aaaaaaccatgctaagtttgtttgcccggctctccatag 662
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 588  aaaaaaccatgctaagtttgtttgcccggctctccatag 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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