Query= MSMg01no147_g04.b1 MSMg01no147_g04.b1 CHROMAT_FILE:
MSMg01no147_g04.b1 PHD_FILE: MSMg01no147_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:58 2005
(503 letters)
>mm_chr4_39340314_39341216
Length = 903
Score = 822 bits (425), Expect = 0.0
Identities = 478/501 (95%), Gaps = 11/501 (2%)
Strand = Plus / Plus
Query: 6 aattcccggaagtcaattctaatcatccaactaactaatttc------tttttttaaaaa 59
|||||| ||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 205 aattccaggaagtcaattctaatcatccaactaactaatttcttttttttttttt----a 260
Query: 60 attaggtagtttcttcatttacatttcaaatgctatcccaaaaatccccataacccccca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attaggtagtttcttcatttacatttcaaatgctatcccaaaaatccccataacccccca 320
Query: 120 cccccctacccacccactcccacttcttggctctggcattcccctgtattgaggcatata 179
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 -ccccctacccacccactcccacgtcttggctctggcattcccctgtattgaggcatata 379
Query: 180 aagtttgcaagaccaaggggtctctcttcccaatgatggctgactagtttctattaacag 239
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 380 aagtttgcaagaccaaggggcctctcttcccaatgatggccgactagtttctattaacag 439
Query: 240 ctttgcacaagcacagaaaccgaatcttttacagagcttccaaaaatgcataccctgggc 299
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 440 ctttgcacaagcacagaaaccaaatcttttacagagcttccaaaaatgtataccctgggc 499
Query: 300 ttgcaaccatcttgctttacaccccttgtggctcgaggcaaataagcagtcaacctgtaa 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttgcaaccatcttgctttacaccccttgtggctcgaggcaaataagcagtcaacctgtag 559
Query: 360 tgtgtgctgtttcacagaaatcattaaataattatttttatgttgttactaaacttatag 419
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgtgtgctgtttcaaagaaatcattaaataattatttttatgttgttactaaacttataa 619
Query: 420 caattcctcattttgtgagttttggtgttgcttttgtgttgttgctcttttaacaattgc 479
|||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 620 caattcctcattttttgagttttggtgtggcttttgtgttgttgttcttttaacaattgc 679
Query: 480 ctttaactctagacctaaaac 500
|||||||||||||||||||||
Sbjct: 680 ctttaactctagacctaaaac 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_g04.g1 MSMg01no147_g04.g1 CHROMAT_FILE:
MSMg01no147_g04.g1 PHD_FILE: MSMg01no147_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:58 2005
(594 letters)
>mm_chr4_39503174_39504166
Length = 993
Score = 1102 bits (570), Expect = 0.0
Identities = 588/594 (98%), Gaps = 1/594 (0%)
Strand = Plus / Minus
Query: 1 actggctttctacactgcattctcaggatatttgctcttttggtgatgaaaagtggctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 851 actggctttctacactgcattctcaggatatttgctcttttggtgatgaaaagtgactct 792
Query: 61 catcacaagattcttgaaactatatttctcaaggcagttggagaatcacccaaaggatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 catcacaagattcttgaaactatatttctcaaggcagttggagaatcacccaaaggatat 732
Query: 121 aatccctagtctaagctgtagtacatttgtggagaagcttgccaaggaccaaccttgtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 aatccctagtctaagctgtagtacatttgtggagaagcttgccaaggaccaaccttgtct 672
Query: 181 tggaaaggagttctgggttgctatggtagttgctatagctccatcagaatgtatacaacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tggaaaggagttctgggttgctatggtagttgctatagctccatcagaatgtatacaacc 612
Query: 241 cacctgactccaacttttctatatgtatcatgctgccagttcttcactaccacaataacc 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 611 cacctgactccaacttttctatatgtatcatgctgcca-ttcttcactaccacaataacc 553
Query: 301 ctagtagtcagggtgtcaggtccaaaacatgtagcatgttgcaatgcatctctgggtcca 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 552 ctagtagtcagggtgtcaggtccaaaacatgtaggatgttgcaatgcatctctgggtcca 493
Query: 361 atgagggagagtttgggagtggtgaaagaaacaacttgaagtcaattatggttacaagcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atgagggagagtttgggagtggtgaaagaaacaacttgaagtcaattatggttacaagcc 433
Query: 421 aacagcacagtgttctgtgtgagcaggccctccaaaacagctgtgtaaacagctctactc 480
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 432 aacagcacagtgttctgtgtgagcaggccctccaaaacagctgtgtagacagctctgctc 373
Query: 481 ttgcagactaaagcccagtcttttatttacatatcgattcaatcgttaccccaggttccc 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttgcagactaaagccaagtcttttatttacatatcgattcaatcgttaccccaggttccc 313
Query: 541 tattgattatcttatgaaacagcattttaagttcttagctatttgattcttaga 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tattgattatcttatgaaacagcattttaagttcttagctatttgattcttaga 259
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 993
Length adjustment: 10
Effective length of query: 584
Effective length of database: 983
Effective search space: 574072
Effective search space used: 574072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
