Query= MSMg01no147_l02.b1 MSMg01no147_l02.b1 CHROMAT_FILE:
MSMg01no147_l02.b1 PHD_FILE: MSMg01no147_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:20 2005
(588 letters)
>mm_chr4_47419651_47420639
Length = 989
Score = 1071 bits (554), Expect = 0.0
Identities = 578/586 (98%), Gaps = 3/586 (0%)
Strand = Plus / Minus
Query: 5 gaattcctac-acattctataaaagctggggatgactctgttggactctgttggaaagca 63
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gaattcctacaacattctataaaagctggggatgactctgttggactctgttggaaagca 730
Query: 64 ccccctccctcggaggagcagccctgcatagcctaggaatacaggtcatacctctgaagt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ccccctccctcggaggagcagccctgcatagcctaggaatacaggtcatacctctgaagt 670
Query: 124 tccctgtagtgatcacacccaagcgccccatcttacaaagggtgctaagttccagagaac 183
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 669 tccctgcagtgatcacacccaagcgcctcatcttacaaagggtgctaagttccagagaac 610
Query: 184 tgatgcaacctgttcatgtctgagtcaagctagtactggcaggcctccttattcctgccc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tgatgcaacctgttcatgtctgagtcaagctagtactggcaggcctccttattcctgccc 550
Query: 244 agtgtctgtcatatgactctgggctgcactggctggagggaggcattccttccatcagca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 agtgtctgtcatatgactctgggctgcactggctggagggaggcattccttccatcagca 490
Query: 304 ggcattttacttcatttggcatatctaaggatgatcagacatgccagtgaccactgcaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ggcattttacttcatttggcatatctaaggatgatcagacatgccagtgaccactgcaaa 430
Query: 364 tgtttcatggcctttttaatacttttact-aatacttattagtttatgaaaaagaaaaag 422
|||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 429 tgtttcatggtctttttaatacttttactaaat-cttattagtttatgaaaaagaaaaag 371
Query: 423 aacctttgcatttttccttacagaaaagtaacaaatatctgcctactaagtagaaacagc 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aacctttgcatttttccttacagaaaagtaacaaatatctgcctactaagtagaaacagt 311
Query: 483 ttagcaaagagccttgtatcaaaaggaaacacttacctcacagctctgccatctgtttgg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttagcaaagagccttgtatcaaaaggaaacacttacctcacagctctgccatctgtttgg 251
Query: 543 aatatttggccttaacttctgctcgcaaactacttttctcatttct 588
||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 250 aatatttggccttaacttctgttcgcaaactacttttctcatttct 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 989
Length adjustment: 10
Effective length of query: 578
Effective length of database: 979
Effective search space: 565862
Effective search space used: 565862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_l02.g1 MSMg01no147_l02.g1 CHROMAT_FILE:
MSMg01no147_l02.g1 PHD_FILE: MSMg01no147_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:21 2005
(297 letters)
>mm_chr4_47245041_47245737
Length = 697
Score = 536 bits (277), Expect = e-157
Identities = 292/297 (98%)
Strand = Plus / Plus
Query: 1 tacttccttgagaccaatcggtaggggaacaaccatcagcccttgtcatcctgccattta 60
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tacttccttgagaccaatcgggaggggaacaaccatcagcccttgtcaccctgccattta 260
Query: 61 tatcctggttgccagatgtgaagcgagactgacagttctttccactaggtagagaatcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatcctggttgccagatgtgaagcgagactgacagttctttccactaggtagagaatcaa 320
Query: 121 gcatgaggaggagctggactggcaaactgttgagttctgggcacagcacaagcccatagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatgaggaggagctggactggcaaactgttgagttctgggcacagcacaagcccatagc 380
Query: 181 aaaaggccatggatagtattgactcctgtcactcagttcattcctagatcacttttgtta 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 aaaaggccatggatagtattgactcctgtcactcagttcattcccagatcacttttgtta 440
Query: 241 aggctttgctggggactgagaggtaaactagagtggtccacgtggaagcccacgaaa 297
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 441 aggctttgctggggactgagaggtaagctagagtggtccacctggaagcccacgaaa 497
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space: 198144
Effective search space used: 198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
