Query= MSMg01no148_c20.b1 MSMg01no148_c20.b1 CHROMAT_FILE:
MSMg01no148_c20.b1 PHD_FILE: MSMg01no148_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:59 2005
(689 letters)
>mm_chr4_66617548_66618636
Length = 1089
Score = 1255 bits (649), Expect = 0.0
Identities = 676/685 (98%)
Strand = Plus / Minus
Query: 5 gaattccatcaactgtgcaccatgtgttcaaatatatgtttaaaggatccattctcattc 64
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 956 gaattccatcaactgtggaccatgtgttcaaatatatgtttagaggatccattctcattc 897
Query: 65 aaaccacatctatataggaatatatcacattaaataccttctaaggataattaagattaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 aaaccacatctatataggaatatatcacattaaataccttctaaggataattaagattaa 837
Query: 125 aatgttagaagcatatttgaatttttataatacttcttagcatttttaaattgcatatgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 aatgttagaagcatatttgaatttttataatacttcttagcatttttaaattgcatatgt 777
Query: 185 atttaaactaaaaataaaatacaactttacactagcctgctcaaacttaaaaattaagca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 atttaaactaaaaataaaatacaactttacactagcctgctcaaacttaaaaattaagca 717
Query: 245 tattcataaaatatggccaaggcagctattattttctttaaatttacagaaagtgaaaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tattcataaaatatggccaaggcagctattattttctttaaatttacagaaagtgaaaga 657
Query: 305 aaggttcacagacctagcatcgtttccctgaggtcatgcttcttgtcgcaacagaataga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 aaggttcacagacctagcatcgtttccctgaggtcatgcttcttgtcgcaacagaataga 597
Query: 365 attcaagtgcgcccgtgttggctccaaggctttacaagagtaagtccttgatttctttgg 424
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 attcaagtgtgtgtgtgttggctccaaggctttacaagagtaagtccttgatttctttgg 537
Query: 425 cccacagcaatatcaaattctgtgtatgagaaaaggctttcaatataaactgttatgatg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 cccacagcaatatcaaattctgtgtatgagaaaaggctttcaatataaactgttatgatg 477
Query: 485 catactaacacaaaaatttctgaagatatgagaattctaacccggtgatggaggtcagtg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 catactaacacaaaaatttctgaagatatgagaattctaacccggtgatggaggtcagtg 417
Query: 545 agtaggtggggaaaatgaaagaagtgcgagaggacagaagccatcagtgaggtgagaaga 604
|||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 416 agtaggtgggaaaaatgaaagaagtgagagaggacagaagccaccagtgaggtgagaaga 357
Query: 605 gagcttcccccaaggagagagggaaggaaggttaaacacatatcgatcttgacagggaaa 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gagcttcccccaaggagagagggaaggaaggttaaacacatatcgatcttgacagggaaa 297
Query: 665 acattcttctgacttttcatcctcc 689
|||||||||||||||||||||||||
Sbjct: 296 acattcttctgacttttcatcctcc 272
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_c20.g1 MSMg01no148_c20.g1 CHROMAT_FILE:
MSMg01no148_c20.g1 PHD_FILE: MSMg01no148_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:59 2005
(623 letters)
>mm_chr4_66483115_66484137
Length = 1023
Score = 1075 bits (556), Expect = 0.0
Identities = 610/636 (95%), Gaps = 15/636 (2%)
Strand = Plus / Plus
Query: 1 ctccaaggtatcaagcactgtaatgggcatgcagtatgaagaggcagagcagattcagtt 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 190 ctccaaggtatcaagcactgtaatgggcatgcagtatgaagaggcagtgcagattcagct 249
Query: 61 gttgtcttggaggatctgaaagtctagtgggtagagaaaagagttttcctaaaacaggac 120
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 250 gttatcttggaggatctgaaagtctagtgggtagagaaa--agttttcctaaaacaggac 307
Query: 121 agatatttgttgtgtaaatgttaaggtgaagtggatagtgcctaactggggaggctgcac 180
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 308 agatatttgttgtgtaaatgttaaggtaaagtggatagtacctaactggggaggctgcac 367
Query: 181 agtgttagtgaattcaaattacgtgttagtgaattcaaattcttagtgtagggacttcca 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 368 agtgttagtgaattcaaattaagtgttagtgaattcaaattcttagtgtagggacttcca 427
Query: 241 cagcatacaaatattgaatcacggcatagtaagtgataggagattggaaatgagagcata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cagcatacaaatattgaatcacggcatagtaagtgataggagattggaaatgagagcata 487
Query: 301 aggacacaagataatat----ct---------taggagaaacactgaggccagtgcttac 347
||||||||||||||||| || ||||||||||||||||||| ||||||||
Sbjct: 488 aggacacaagataatatcatgctttaaaattgtaggagaaacactgaggccggtgcttac 547
Query: 348 ctcaagagaccgaaatacgtatcaggaagtgatttccacataggccagtgaattacgtag 407
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 548 ttcaagagaccgaaatacgtatcaggaagtgatttccacataggccagtgaattatgtag 607
Query: 408 aactgagaacaacactttgaatggaatgaacgttttcttcattcacaccagggattcagt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 aactgagaacaacactttgaatggaatgaacgttttcttcattcacaccagggattcagt 667
Query: 468 tttgctcttgccatagtgatatgctcttaatcttctacttcagaccttctttgcctttcc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tttgctcttgccatagtgatatgctcttaatcttctacttcagaccttctttgcctttcc 727
Query: 528 ctttctctattctctatgaccacaataccataggcaaggtgaggaaggagactagcttat 587
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 728 ctttctctattctctatgaccacaataccacaggcaaggtgaggaaggagactagcttat 787
Query: 588 ggcagtggcccctaggaaagcacatttttctgtctg 623
|||||||||||| |||||||||||||||||||||||
Sbjct: 788 ggcagtggcccccaggaaagcacatttttctgtctg 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
