Query= MSMg01no148_g10.b1 MSMg01no148_g10.b1 CHROMAT_FILE:
MSMg01no148_g10.b1 PHD_FILE: MSMg01no148_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:17 2005
(679 letters)
>mm_chr4_16975737_16976814
Length = 1078
Score = 1228 bits (635), Expect = 0.0
Identities = 665/675 (98%), Gaps = 3/675 (0%)
Strand = Plus / Minus
Query: 5 gaattcattgttttaacttgctgagtagttcataacagccttatttataatacccagaag 64
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1074 gaattcattgttttaaattgctgagtagttcataacagccttatttataatagccagaag 1015
Query: 65 ttggaaagaacccagatgtccctcaacagaggaatgaatacagaaaatgtggtacattta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 ttggaaagaacccagatgtccctcaacagaggaatgaatacagaaaatgtggtacattta 955
Query: 125 cacaatggagtactactcagaaattaatttttaatagaagaaaattttagtataagatac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 cacaatggagtactactcagaaattaatttttaatagaagaaaattttagtataagatac 895
Query: 185 agaaaaatcctatatgaaactaaaaaggatttaatgtaatttttgaaaccatgccaaaaa 244
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 agaaaaatcctatatggaactaaaaaggatttaatgtaatttttgaaaccatgccaaaaa 835
Query: 245 gaaaaaagaaaaacatagtcataaaattataaaataagtgtatttaagttctattatcct 304
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 834 gaaaaaagaaaaacatagtcataaaattataaaataagtgta-ttaagttctattatcct 776
Query: 305 cagcattttgtcagtcaggaaacatatgtaaggctacacagaaactctttcctaatatcc 364
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 cagca-tttgtcagtcaggaaacatatgtaaggctacacagaaactctttcctaatatcc 717
Query: 365 cttcaggaaataaaatgctgaactatctttagcagaactttgtaataattttagttaaat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 cttcaggaaataaaatgctgaactatctttagcagaactttgtaataattttagttaaat 657
Query: 425 aaaataacaggataggaaaagacaattcaataaaatagccctcaaatacactaaatgatg 484
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 656 aaaataacaggataggaaaagacaattcaataaaatagtcctcaaatacactaaatgatg 597
Query: 485 ctgt-aaaaaaatcacacaattttagactatctgaatttactaaacaataaaagtcagaa 543
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 596 ctgtaaaaaaaatcacacaattttagactatctgaatttactaaacaataaaagttagaa 537
Query: 544 cctttggaggtttagttatgtggcagaaagtttaagacattctctaaaatgtgtattatt 603
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 536 cctttggaggtttagttatgtggcagaaagtttaagacagtctctaaaatgtgtattatt 477
Query: 604 ttcagcatcctgggcctacatatttctgagcagcaaacattcacgatagtaaatgtttga 663
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 476 ttcagcatcctgggcctacatatttctgagcagcaaacactcacgatagtaaatgtttga 417
Query: 664 ttagattcattataa 678
|||||||||||||||
Sbjct: 416 ttagattcattataa 402
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1078
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1068
Effective search space: 714492
Effective search space used: 714492
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_g10.g1 MSMg01no148_g10.g1 CHROMAT_FILE:
MSMg01no148_g10.g1 PHD_FILE: MSMg01no148_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:17 2005
(648 letters)
>mm_chr4_16845024_16846071
Length = 1048
Score = 1236 bits (639), Expect = 0.0
Identities = 645/647 (99%)
Strand = Plus / Plus
Query: 1 acttttgaaatgtttgtgaagccatttctagacacaaatttacttcagcttctttcaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttttgaaatgtttgtgaagccatttctagacacaaatttacttcagcttctttcaaac 260
Query: 61 tattcaagagtgagacattttcatttcttgctagagatcaagaaagaacccacgagattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattcaagagtgagacattttcatttcttgctagagatcaagaaagaacccacgagattg 320
Query: 121 ttaattagccaaatcattcttcatcccaaacagctaaagattttcaagccaattaaaaaa 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 ttaattagccaaatcattcttcatcccaaatagctaaagattttcaagccaattaaaaaa 380
Query: 181 gattcacaaagttgtactctggcaggttctggtggttgggacttttggttgacaggatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattcacaaagttgtactctggcaggttctggtggttgggacttttggttgacaggatat 440
Query: 241 aagtcttgagttttcatagcacggttgcaacacacagccagtgacaaaacacaccagata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtcttgagttttcatagcacggttgcaacacacagccagtgacaaaacacaccagata 500
Query: 301 taatcccacttgtgctgtggaactgtgcagcagcagcccggaaaaccgttgcccacttat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taatcccacttgtgctgtggaactgtgcagcagcagcccggaaaaccgttgcccacttat 560
Query: 361 accgtgcatgtaagtgtcttccaatataggcttaatgagtttcttcatatatagaaacgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accgtgcatgtaagtgtcttccaatataggcttaatgagtttcttcatatatagaaacgc 620
Query: 421 taaaagtctaaaaggaacaagtgtgcatatttgattcattataaacttagtattctctat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaaagtctaaaaggaacaagtgtgcatatttgattcattataaacttagtattctctat 680
Query: 481 gctgttttgcttttgtatattggaatgtattattaatgcctaaactatgtcttttgttgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctgttttgcttttgtatattggaatgtattattaatgcctaaactatgtcttttgttgt 740
Query: 541 ctgtgtggttagtactcaatcagattttatgccttattattttattcttatttcacagcc 600
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgtgtggttagtacccaatcagattttatgccttattattttattcttatttcacagcc 800
Query: 601 ccgggttcagtcctattttctcctgtgaatgactcaatgataatttc 647
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ccgggttcagtcctattttctcctgtgaatgactcaatgataatttc 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
