BAC Information

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BAC

Clone NameMSMg01-148J08
Chromosome4 (Build37)
Map Location 30,681,957 - 30,682,298
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665185, LOC619906
Downstream geneLOC100040864, LOC100040891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148J08.T7 (MSMg01no148_j08.b1)MSMg01-148J08.TJ (MSMg01no148_j08.g1)
ACCAG351536AG351537
length701694
length of high quality
(start - end)
375 (48 - 422)342 (74 - 415)
definitionCHROMAT_FILE: MSMg01no148_j08.b1 PHD_FILE: MSMg01no148_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:31 2005CHROMAT_FILE: MSMg01no148_j08.g1 PHD_FILE: MSMg01no148_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAATCCGC
GGAATTCTCACCTGATTACCCTGAATGGCAGAGAAGCACCTGAAAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCTTGGATTTGGAGACAGAGGAACACTCCTCCATTGTTGGTG
GGAATGTAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA
AAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATCCCCCCCCGAAGCTGGAAAGAACCTAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGTAGGGCATCATCCTGAGTGAGGTAACACATTCCCTAAG
AAACTCCTTCATATGTAACTCACTGATAAGCGGATATTAGCCCCAAACCT
AGGATACCCCTGATATAAGATAAAATTTGCTATACACATGAAATTCTAGA
N
CTCATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATAGGCAGCATTCATATTCTGGAGCCA
ATGTTTCTATAGATCAGTTGAACATGGTTGTTTCTTTCTTTATTCAGAAA
TCAATATGATATTCATTAGAATTTACATCTATTCCCATTTTTGCTTCATA
CTGCACTTTTAGCATAAGAATACTGAAAGCTTATAAATGCTACTTGTGCT
TGCCTTTGATACACTATTTTGTGAAATATTGTCTGAACTGTGAGACAGAC
ACAATGATTAATAAAGCCTCTGGCAAGTTTTATAATATTATACTGTTCTA
TTATCCTCTTTGAAGAAAAACGTATGTTTACCTGTTATTCATCATTGGAT
AAATATTTACCAAGTGCCCCCCTGACATAAGATGATATAACTGTGATTTG
CAAATTATTCATAGTAAACATTTTTATAGGCTATAAAAAGCCATAAAATA
ACCACTGTTCACACTAACGTTTATCTTCTTTTGGAAAATCAAATTACTAC
CCAGCATACTCAGTGAGACTTTGCATATAATTGCTTGTGTATAATGCTTT
CTAAACTGTGATGTTCTGATTTCCACAACCATGAACTTTCTCTTTCCACT
TTCCTTGTCCCCTTAATCTTCATTGTGAACTGTACTGCTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_j08.g1 MSMg01no148_j08.g1 CHROMAT_FILE:
MSMg01no148_j08.g1 PHD_FILE: MSMg01no148_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:32 2005
         (342 letters)



>mm_chr4_30681757_30682498
          Length = 742

 Score =  646 bits (334), Expect = 0.0
 Identities = 340/342 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataggcagcattcatattctggagccaatgtttctatagatcagttgaacatggttgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ataggcagcattcatattctggagccaatgtttctatagatcagttgaacatggttgttt 483

                                                                       
Query: 61  ctttctttattcagaaatcaatatgatattcattagaatttacatctattcccatttttg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 482 ctttctttattcagaaatcaatatgatattcattagaatttacatctattcctatttttg 423

                                                                       
Query: 121 cttcatactgcacttttagcataagaatactgaaagcttataaatgctacttgtgcttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cttcatactgcacttttagcataagaatactgaaagcttataaatgctacttgtgcttgc 363

                                                                       
Query: 181 ctttgatacactattttgtgaaatattgtctgaactgtgagacagacacaatgattaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ctttgatacactattttgtgaaatattgtctgaactgtgagacagacacaatgattaata 303

                                                                       
Query: 241 aagcctctggcaagttttataatattatactgttctattatcctctttgaagaaaaacgt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 302 aagcctctggcaagttttataatattatactgttctattatcctctttgaagaaaaacct 243

                                                     
Query: 301 atgtttacctgttattcatcattggataaatatttaccaagt 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 atgtttacctgttattcatcattggataaatatttaccaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)