BAC Information

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BAC

Clone NameMSMg01-148P04
Chromosome4 (Build37)
Map Location 5,864,223 - 5,864,567
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039338, 1700012H17Rik, LOC669309
Downstream gene3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414, Tox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148P04.T7 (MSMg01no148_p04.b1)MSMg01-148P04.TJ (MSMg01no148_p04.g1)
ACCAG351805AG351806
length709698
length of high quality
(start - end)
249 (76 - 324)341 (71 - 411)
definitionCHROMAT_FILE: MSMg01no148_p04.b1 PHD_FILE: MSMg01no148_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:01 2005CHROMAT_FILE: MSMg01no148_p04.g1 PHD_FILE: MSMg01no148_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGA
ATTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACACTTCA
TTACCACCGTTCCCCAGCTGAAGAGTTCTGAATTCACGCAGTTGAATCCT
TTTCAACAGTCTGTTTTACGGGAACCTTTATGACCGTGACCCGCAGTTTT
GGTTCCGGAATGAGGGATCTTCCTTGTGCCGGTGGTGGTAACCGTCCCAG
GTTTTTTCGTCTCAGGATTTTTCATCCCGGGGTTTTTTGTCCCGGGTTTC
AGCACCAACTCTTACACGCGTTCATGTGACCGGCCAGGAAAGACGCAGCA
AACTAGAATCTTTTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCAA
GAGTGCAAGAGAGCAAGAGCTCCCCCGCTTACATCTTTAGGAGTCAGAGC
GCAAGAGCGCAAGAGTAAAAGCATGAGCCTTGAGTAAGATAGCAAAAGGA
GAGAATGCCGAAACCCCGTCCCTTTTTAAGGAGAATTATTCTCCGCCTAG
GACGTAATACTCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGTCTTCAC
GGCCAAAGGCAGAGAACATGTTGTTGTAAAATTACCCCTGGTACCTGCGC
AGATTATTTGTTTACCATTTAGAACTTTGGAAGTCAGCGCCACCCTCGCC
ACGTCTAAG
TCATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGAAACATGATGAACTTCTGCTACAGTA
CTTTTAAGTCATCATGCTTGAAAATACAGTTTTCTTCTCAAGCAATGTTG
TAGCCTTTCCTGGGCACTCAGCCAGGACACATATCATTCATCCTATAGTG
AGGTGAGCCCTTGGCCAAAGTTTCTGCCCAATGAAATATGATGTCGTTCC
TGTAGAGACTTGGCTCAAAGCATCCTATAGGCTCCCAAGCTCTGTGGAAC
TAAAAATTGACAAAGAAATAATATTCATTTGTTGAGACATGGAAAATTGG
AGTTTGTTAGTATAGTAGTTAGCCTATTCTTACTAATATTCACATTTCAA
GTATTACACTCTCCCCCCCATCTCAAAGAAAAAGTTTTCTACAGTTAACG
GTCCCTACAATAGAGAAATGTATTATACAAAGGCCAAAATGAGAAGGTTT
ACCAGTTCAGGCATAATACCTGGATACTGGGAGATTCTCAGGCCTACACC
TATGAGGGCTTTGGTAAATGCTATCTCACTGAAGTATGTAAAACACTTGC
TGTAAACGTGAGACCCTCCTTTTAAAACCATGTATAGCTTGTCTGGAAAC
GCTCCTTGAAAAAATCATTAGAAACTCTTGGCAAAAAAACCTGTTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_p04.g1 MSMg01no148_p04.g1 CHROMAT_FILE:
MSMg01no148_p04.g1 PHD_FILE: MSMg01no148_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:01 2005
         (341 letters)



>mm_chr4_5864023_5864767
          Length = 745

 Score =  598 bits (309), Expect = e-175
 Identities = 336/345 (97%), Gaps = 4/345 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgaaa-catgatgaacttctgctaca-gtacttttaagtcatcatgcttgaaaataca 58
           ||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 tttgaaaacatggtgaacttctgctacaagtacttttaagtcatcatgcttgaaaataca 260

                                                                       
Query: 59  -gttttcttctcaagcaatgttgtagcctttcctgggcactcagccaggacacatatcat 117
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 agttttcttctcaagcaatgttgtagcctttcctgggcactcagccaggacacatatcac 320

                                                                       
Query: 118 tcatcctatagtgaggtgagcccttggccaaagtttctgcccaatgaaatatgatgtcgt 177
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tcatcctatagtgaggtgagcccttggccaaagtttctgcccaatgaaatatgatgtcat 380

                                                                       
Query: 178 tcctgtagagacttggctcaaagcatcctataggctcccaagctctgtggaactaaaaat 237
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctgtagagacttggcccaaagcatcctataggctcccaagctctgtggaactaaaaat 440

                                                                       
Query: 238 tgacaaagaaataatattcatttgttgagacatggaaaattggagtttgttagtatagta 297
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgacaaagaaataaaattcatttgttgagacatggaaaattggagtttgttagtatagta 500

                                                        
Query: 298 gttagcctattcttactaatattcacatttcaagtatta-cactc 341
           ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 gttagcctattcttactaatattcacatttcaagtattatcactc 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 745
Length adjustment: 9
Effective length of query: 332
Effective length of database: 736
Effective search space:   244352
Effective search space used:   244352
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)